Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

 Score =  239 bits (610), Expect = 1e-67
 Identities = 140/340 (41%), Positives = 203/340 (59%), Gaps = 12/340 (3%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH--RGVVSAASYEARRFGVRSALPMST 61
           R I+HIDMD +FA+VE  D P  RGKP+AVGGS   RGV+S  +YEAR+FGVRSA+    
Sbjct: 2   RKIIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATGY 61

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           AL+LCP LI+VPGRM+ Y E+S +I      ++ L+EP S+DEAYLD +  +   G    
Sbjct: 62  ALKLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSATL 121

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181
           +  A++  +L  TG LT S G AP+KFLAK+ASD+NKPNG  ++ P++VAEF+++L + +
Sbjct: 122 IAEAIRRDILAETG-LTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRK 180

Query: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241
           IPGVGK + + L  LG+    DV  Y ++    RFGK G  L ERA G+D R +    E 
Sbjct: 181 IPGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRER 240

Query: 242 KSESAENTFSEDTAD----RAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSI 297
           KS   E T ++D       + V+   +   + R+G S + +++  + +  K+K+ DF+  
Sbjct: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSAKGRQIHKQVV--KLKFNDFKQT 298

Query: 298 SRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGV 337
           +  H   E +     +F E      A      +RL+GV V
Sbjct: 299 TIEHRSDEVSV---VMFYELLSQAMARQEGRGIRLLGVSV 335