Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 833 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  366 bits (940), Expect = e-105
 Identities = 222/565 (39%), Positives = 317/565 (56%), Gaps = 10/565 (1%)

Query: 366 DRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVGRLSP 425
           D T QL +   KL L  ++F H  E + +TD+   V++VN AF  ITG  +++ V    P
Sbjct: 271 DITNQL-EREEKLRLHAKIFEHNSEAVIVTDAMQRVLSVNKAFCDITGF-SEAEVRMSLP 328

Query: 426 ALGMVPVNGTRSVWDE----MLEHGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVILNC 481
           AL + P     ++  E    +   G+W GE     ++G   P W+S+ S+++  G++ + 
Sbjct: 329 AL-LQPTRDDPNLAAEIQVALASSGAWQGELWDRRKNGDTYPVWVSISSVKNTRGILSHY 387

Query: 482 VGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLAVVFIDM 541
             VFSDI++ K+ E QI   A +D LTGLPNR  +F LL  A+  A       AV+F+D+
Sbjct: 388 FLVFSDISERKEAERQIYRLAYYDALTGLPNRSLLFSLLEQALIEAQRNQTHGAVLFVDL 447

Query: 542 DGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDKGHLDGI 601
           D FK INDS+ HA  D LL +VARRL+  LR  D++ RLGGDEF+ A+  I+ + H   +
Sbjct: 448 DRFKTINDSFGHAPADALLKEVARRLQETLRAEDVVARLGGDEFIVALFDITKREHAALV 507

Query: 602 MRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDMGKNAIA 661
            +++ +  AEPF+       +TAS G++V+PDDG  A  LL  AD AMYR K      + 
Sbjct: 508 GQKILDALAEPFQIVHHEVLLTASIGIAVFPDDGRDAETLLRNADTAMYRVKQTSGGPL- 566

Query: 662 VFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWERDGAVV 721
            + +E  L    R +++  ++ A+  +EFRL YQP  +  T R+   EAL+RW      +
Sbjct: 567 FYSQEMNLRSLERLKLEGALRKAVERQEFRLYYQPQVELATGRIVGAEALIRWHHPEQGM 626

Query: 722 APPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGL-TLPVAVNISSRCLNSDETIS 780
            PP+ FIP+AE +  I  I   V++ AC Q   WR  G   L +AVN+S R      +  
Sbjct: 627 IPPTAFIPLAEETGLIVSIGAWVLDAACRQGRLWREAGYEDLTIAVNLSPRQFRPGLS-Q 685

Query: 781 HIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGTGYSSLQY 840
            +   L  +  P + LE+EITE  LM N E    ML      GVR++LDDFGTGYSSL Y
Sbjct: 686 LVNETLERHAFPGENLELEITEGMLMHNSEAVIQMLEDFHQAGVRLALDDFGTGYSSLAY 745

Query: 841 LARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQLSALRGM 900
           L + PI  LKIDR+FV  +  +G    I + I+ +A++LRL  +AEGVET  QL  LR  
Sbjct: 746 LKKFPIDNLKIDRSFVSGIPHDGDDSAIAKAIISMAKNLRLLVIAEGVETEEQLDFLRAA 805

Query: 901 GVDYLQGYCLGRPLPADDILTLCRR 925
           G D +QGY    P+P +D   L  R
Sbjct: 806 GCDEIQGYLFSPPVPVEDFQLLLER 830



 Score = 43.1 bits (100), Expect = 7e-08
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 23/187 (12%)

Query: 367 RTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVGRLSPA 426
           R   L    AK+    ++  H  + +   D +G ++  N   ER+ G  A   VGR    
Sbjct: 146 RQEDLARMEAKVEEQSQILDHIHDSVITMDLSGYIMGWNKGAERLFGYTAAEAVGR--HI 203

Query: 427 LGMVPVNGTRSVWDE-------MLEHGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVIL 479
           L +   +G+ ++ +E        L+HG    E R   + G      +SL   R+E G   
Sbjct: 204 LFLYADDGSETLEEEDDLFYNAFLDHGRREFEVRRRKKSGEVFWASVSLSLSRNEAGEPA 263

Query: 480 NCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLAV--V 537
             +G   DIT+  ++E ++   A             IFE   +A+       + L+V   
Sbjct: 264 GLIGYLVDITNQLEREEKLRLHAK------------IFEHNSEAVIVTDAMQRVLSVNKA 311

Query: 538 FIDMDGF 544
           F D+ GF
Sbjct: 312 FCDITGF 318