Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1158 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  372 bits (956), Expect = e-107
 Identities = 216/570 (37%), Positives = 316/570 (55%), Gaps = 4/570 (0%)

Query: 353  LNEAHRELERRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERIT 412
            L    R L   + D TA+   A  +L L  +VF  A EGI I D    +++VN AF  IT
Sbjct: 582  LLRGRRLLYSIIHDITARR-RAEEQLRLSAKVFEGASEGIVICDRNNRIMSVNRAFVEIT 640

Query: 413  GVDAQSMVGRLSPAL--GMVPVNGTRSVWDEMLEHGSWIGETRGPHRDGWQIPQWLSLVS 470
            G     + GR    L  G        ++W  +   G+W GE     + G   P+WLS+ +
Sbjct: 641  GYAEAEVQGRDPRVLNSGRHDAAFFANLWHHLKTAGTWQGEIWNRRKGGEVYPEWLSITT 700

Query: 471  IRDETGVILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVR 530
            +RDE G + N V VF+D+++ K+ E  I   A HD LTGLPNR  + + L  AIA A   
Sbjct: 701  VRDEAGEVSNYVAVFADVSERKRNEEHIRFLAEHDYLTGLPNRSLLHDRLQQAIALAERN 760

Query: 531  GQKLAVVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVG 590
             + LA++FID+D FK INDS  H  GDQLL +V RR++A +R  D + R GGDEF+  + 
Sbjct: 761  SESLALMFIDLDRFKNINDSLGHQVGDQLLQEVGRRIQACVRSADTVSRPGGDEFIILLP 820

Query: 591  GISDKGHLDGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMY 650
             I        +  +L E+   P++ GG    +TAS G++V+P+DG     L+  AD AMY
Sbjct: 821  SIETPQDAARVAEKLLESLNRPYQLGGHELVITASIGIAVFPEDGRDFQTLVKNADAAMY 880

Query: 651  RAKDMGKNAIAVFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEA 710
             +K+ G+++   F  +       R  ++  ++ A+  +EF L YQP  D  + RV   EA
Sbjct: 881  YSKEAGRDSFHFFTPDMNARVFERLSLENSLRRALERQEFLLYYQPQVDMPSGRVIGFEA 940

Query: 711  LLRWERDGAVVAPPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGL-TLPVAVNIS 769
            L+RW+     +  P+ FIPVAE S  I  I   V+  AC Q+ AW+ +G+  +PVAVNIS
Sbjct: 941  LIRWQHPQMGLVSPARFIPVAEDSGLIVPIGEWVLGEACRQNRAWQEQGMPAVPVAVNIS 1000

Query: 770  SRCLNSDETISHIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLD 829
            +      +  + +   L    + P  LE+E+TE+ ++   +    +L  L+  GVR+S+D
Sbjct: 1001 ALQFRQPQFEASVERALAESGLEPAWLELELTESMMLHQGQGATDLLDRLKARGVRLSID 1060

Query: 830  DFGTGYSSLQYLARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVE 889
            DFGTGYSSL YL R+P+  LKID+ FV+++  + G   I  TI+ +A +L L+ +AEGVE
Sbjct: 1061 DFGTGYSSLAYLKRLPLDKLKIDQAFVRDIASDAGGAAITATIIQMAHNLGLSVIAEGVE 1120

Query: 890  TAAQLSALRGMGVDYLQGYCLGRPLPADDI 919
            T AQL  L+       QG+   RP+PA DI
Sbjct: 1121 TEAQLEFLQAHDCASAQGFYFARPMPAADI 1150



 Score = 28.1 bits (61), Expect = 0.003
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 34/146 (23%)

Query: 282 LTAMAVLVALATALL-----LSRTVTRTVLRLSGWVRSIGPGNMGQRIRIDTGDELEGLA 336
           LTA+AV V    A+      LSR     V       R +    +GQ       DE+ GLA
Sbjct: 289 LTALAVAVLAWLAMRRVLAPLSRLRQHVVEVRQDHARKLADPVLGQ-------DEIGGLA 341

Query: 337 NAFNGMLDLLEASQRELNEAHRELERRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITD 396
             F  +LD       EL +A  +L  R+ +  + + DA+             V G+ + D
Sbjct: 342 REFYLLLD-------ELGQARDDLGSRIAEMES-IFDASP-----------VVIGV-VRD 381

Query: 397 SAGTVVAVNPAFERITGVDAQSMVGR 422
               ++  N AFER+ GV  ++ +G+
Sbjct: 382 RC--LIQANRAFERLFGVSLETALGQ 405