Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 953 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  357 bits (916), Expect = e-102
 Identities = 210/547 (38%), Positives = 302/547 (55%), Gaps = 8/547 (1%)

Query: 377 KLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVGRLSPALGMVPVNGT- 435
           +L L  +VF  + E   +TD+   + +VN AF   TG  A+ ++GR    L     + T 
Sbjct: 397 ELRLAAKVFDTSNEAFLVTDADNNIRSVNRAFCETTGYSAEEVLGRNPRLLSSGHHDKTF 456

Query: 436 -RSVWDEMLEHGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVILNCVGVFSDITDIKQK 494
            R +W+ +   G W GE     + G   P+W  +  ++D+ G ++N V VFSDI+D K  
Sbjct: 457 YRQMWEALNSQGYWQGEIYDRRKSGEIYPKWTRINVVKDDQGRVVNHVAVFSDISDRKAL 516

Query: 495 EAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRG----QKLAVVFIDMDGFKFINDS 550
           E ++   A HD LTGLPNR  +   L  A+  A  RG      +A++ +D+D FK INDS
Sbjct: 517 EERLQFLAQHDHLTGLPNRNLLRLRLEQAVESAMERGAGGINPVALLLLDLDHFKTINDS 576

Query: 551 YDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDKGHLDGIMRRLFETFA 610
             H  GDQLL  V +RL+  LR    L R GGDEF+  +    D   +      +    A
Sbjct: 577 LGHHAGDQLLRTVVKRLKNILRESSTLCRQGGDEFLIVLPQAQDLARVSRAAETVLAALA 636

Query: 611 EPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDMGKNAIAVFCEEQCLE 670
            PFE  G   S+T S G+S+ PDDG   + LL +AD A+  AK  G+NA   F E   + 
Sbjct: 637 TPFEVDGHPLSITGSIGISLAPDDGSDFDTLLKKADTALVHAKQSGRNAYRFFTEAMNVS 696

Query: 671 FTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWERDGAVVAPPSVFIPV 730
              R  + Q +  A+  +E  L YQP  D  + RV  VEALLRW     +V PP  FIP+
Sbjct: 697 TLERLTLQQRLHQALERQELVLYYQPQLDLASGRVVGVEALLRWRTPEGLV-PPGKFIPL 755

Query: 731 AESSNAIREITRLVVEMACVQHAAWRLEGL-TLPVAVNISSRCLNSDETISHIAACLNAY 789
           AE +  I  +   V++ AC Q   W   GL  + +AVN+S+   + D  +  +   L+A 
Sbjct: 756 AEETGLIVPMGAWVIQEACRQARTWLDAGLPPMTMAVNLSALQFHRDNLLITVGDALSAA 815

Query: 790 DVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGTGYSSLQYLARMPIHAL 849
            +P  +LE+E+TE+ L+Q+ E   A L  +  +GV +S+DDFGTGYSSL YL R  +  L
Sbjct: 816 SLPAASLELELTESILIQDAEATLATLKAMNAMGVLLSIDDFGTGYSSLAYLKRFTVDKL 875

Query: 850 KIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQLSALRGMGVDYLQGYC 909
           KID++FV+++  +G S  IV  ++ +A SL+L T+AEGVET +Q +ALR  G D +QGY 
Sbjct: 876 KIDQSFVRDITSDGDSAAIVRAVVQMASSLKLKTIAEGVETESQAAALRATGCDEVQGYL 935

Query: 910 LGRPLPA 916
             RP+PA
Sbjct: 936 YARPMPA 942



 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 22/220 (10%)

Query: 284 AMAVLVALATALLLSRTVTRTVLRLSGWVRSIGPGNMGQRIRIDTGDELEGLANAFNGML 343
           A+AVL AL  +LLL   VTR + R+S   R +G G++ +RI +   DE+  LA  F+   
Sbjct: 196 ALAVLGALLLSLLLDLWVTRRLQRISAAARRLGEGHLNERIGMAGDDEIATLARQFDETA 255

Query: 344 DLLEASQRELNEAHRELERRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVA 403
             L   Q  L +A  +L+  V+               M  +       +F  D+ G  V 
Sbjct: 256 ASLARKQDALQQADAQLQEHVQ--------------FMHTLIEAIPSPLFYKDAQGRYVG 301

Query: 404 VNPAFERITGVDAQSMVGR----LSP-ALGMVPVNGTRSVWDEMLEHGSWIGETRGPHRD 458
            N AF    G +   ++G+    L+P  L  +     R ++D     G  + E++  + D
Sbjct: 302 CNEAFLTYLGKERHELLGKSVYDLAPKELADIYAAADRQLFD---NPGKQVYESQACYAD 358

Query: 459 GWQIPQWLSLVSIRDETGVILNCVGVFSDITDIKQKEAQI 498
           G +     +  +  D  G +   VGV  DIT+ K++E ++
Sbjct: 359 GSKHDVIYNKATFMDAEGRVAGLVGVMVDITERKRQEEEL 398