Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 972 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  386 bits (991), Expect = e-111
 Identities = 216/558 (38%), Positives = 310/558 (55%), Gaps = 10/558 (1%)

Query: 369 AQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVGRLSPALG 428
           +++  A A+LHL   VF    E + +TD+ G + +VNPAF  +TG       GR   A G
Sbjct: 402 SEIKQAEARLHLAARVFDSLGEAMVVTDARGRIQSVNPAFSEVTGYSEADARGR---APG 458

Query: 429 MVPVNGTRS------VWDEMLEHGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVILNCV 482
            +  +G         +W  + E G W GE     + G   P+WLS+ +I+D  G +   V
Sbjct: 459 HILASGQHDPAFYAQMWQSLQEQGKWQGEVINRRKSGETYPEWLSITAIKDGAGQVSQYV 518

Query: 483 GVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLAVVFIDMD 542
           G+F+DITD KQ EA I H A HD LTGLPNR+  ++ L +A+ +A    +KLAV+ +D+D
Sbjct: 519 GLFTDITDRKQAEAHIHHLAYHDPLTGLPNRRLFYDRLENALRQAHRSRRKLAVLLLDLD 578

Query: 543 GFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDKGHLDGIM 602
            FK +ND+  H  GD LL +V  RL   LR GD L RLGGDEFV  +  +        + 
Sbjct: 579 RFKAVNDTLGHDQGDLLLKEVGARLSLCLREGDTLARLGGDEFVLLLPEVLSAEDASIVA 638

Query: 603 RRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDMGKNAIAV 662
            +L   F +P   G      + S G+++YP DG+   +LL  AD+AMY AKD G+ A   
Sbjct: 639 GKLLAQFDQPVRLGEREIFASTSIGIALYPADGEDGESLLKHADVAMYAAKDGGRAAYRF 698

Query: 663 FCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWERDGAVVA 722
           F          R  ++ +++ A+ G +  L YQP   A + R+  VEAL+RW      + 
Sbjct: 699 FIASHNERSLERLELENDLRRAVEGEQLLLYYQPQIGASSGRIAGVEALVRWRHPTRGLV 758

Query: 723 PPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGLTLP-VAVNISSRCLNSDETISH 781
            P  FI +AE++  I  I    +  AC Q  AW+ +G+ +P VAVN+S+R L   +    
Sbjct: 759 MPDSFIALAENAGLIDAIGHWCLVAACRQLRAWQEQGVPVPRVAVNVSARQLRRWDFAQE 818

Query: 782 IAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGTGYSSLQYL 841
           +   +    + P  LE+E+TE+SL  + E+  A+  TLR  GVRVS+DDFGTGYSSL YL
Sbjct: 819 VLQVVTQSGIDPAGLELELTESSLADDPEQILAIFSTLRQAGVRVSIDDFGTGYSSLSYL 878

Query: 842 ARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQLSALRGMG 901
           +R P+  +KIDR+FV  LL++  +  +V  ++ LA  L + TVAEGVET AQ   L  + 
Sbjct: 879 SRYPVDEVKIDRSFVSRLLDDREARSVVRAVILLAHGLGMRTVAEGVETEAQWQVLSDLD 938

Query: 902 VDYLQGYCLGRPLPADDI 919
            D LQGY   +P+P   I
Sbjct: 939 CDELQGYLFSKPVPPHQI 956



 Score = 30.4 bits (67), Expect = 6e-04
 Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 24/164 (14%)

Query: 390 EGIFITDSAGTVVAVNPAFERITGVDAQSMVGR-----LSPALGMVPVNGTRSVWDEMLE 444
           EGI   D  G +   N   E + G     ++GR     L P      V+G       +  
Sbjct: 299 EGILALDRGGRITFANQRAEALLGAAPGGLLGRDAATVLWPGAAPAEVSGLARA---LAT 355

Query: 445 HGSWIGETRGPHRDGWQIPQWLSLVSIRDETGVI--LNCVGVFSDITDIKQKEAQITHQA 502
              + GE      DG   P  +    +R   G       V  F DI++IKQ EA++ H A
Sbjct: 356 GAVFEGEDDFVRSDGSAFPVAVLGAPLRGGEGDADQAGYVASFRDISEIKQAEARL-HLA 414

Query: 503 NHDDLTGLPNRKHIFELLHDAIARASVRG--QKLAVVFIDMDGF 544
                        +F+ L +A+     RG  Q +   F ++ G+
Sbjct: 415 -----------ARVFDSLGEAMVVTDARGRIQSVNPAFSEVTGY 447