Pairwise Alignments

Query, 936 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  382 bits (980), Expect = e-110
 Identities = 213/572 (37%), Positives = 322/572 (56%), Gaps = 15/572 (2%)

Query: 352  ELNEAHRELERRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERI 411
            EL    R + R + +R      AN  L     VF ++ EGI +TD+   +  VNPAF +I
Sbjct: 485  ELARMSRAMNRMLSERQK----ANQALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQI 540

Query: 412  TGVDAQSMVGRLSPALGMV--PVNGTRSVWDEMLEHGSWIGETRGPHRDGWQIPQWLSLV 469
            TG   + + GR    L     P +   ++W+ + +   W GE     +DG   P++L++ 
Sbjct: 541  TGYSLEDVKGRSPSMLSSKRHPSHFYTAMWEALQKDSKWEGEIWNKRKDGQVYPEYLAIT 600

Query: 470  SIRDETGVILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASV 529
             +R+E G I+  +G+F DI+  KQ E  + +QA+ D LTGLPNRK   E L   I  A  
Sbjct: 601  VVRNERGEIIQHIGLFMDISKRKQYEQDLWYQAHFDTLTGLPNRKLFNERLQHEIQLAQH 660

Query: 530  RGQKLAVVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAV 589
              +KLA++ ID+D FK+IND   HATGD LL DVA+RL       D++ R+GGDEFV  +
Sbjct: 661  DSRKLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDLIARIGGDEFVLIL 720

Query: 590  GGISDKGHLDGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAM 649
              ++++  ++ +  R+ ET + PF        ++ASFG+ VYP+DG   ++L    ++AM
Sbjct: 721  PRVTNEFAIEHMASRIIETLSTPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAM 780

Query: 650  YRAKDMGKNAIAVFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVE 709
            Y+AKD G+N    F          R  ++Q ++ A+A  EF L YQPI + +T +V  VE
Sbjct: 781  YQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQDEFTLHYQPIVEMKTGKVCSVE 840

Query: 710  ALLRWERDGAVVAPPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGLTLPVAVNIS 769
            AL+RW+     + PP  FI +AE +  I  +   V+  A      W+  GL L VA+N+S
Sbjct: 841  ALIRWQDPDLGLIPPDQFIGIAEETGLIEPMGEWVLNQAMHDLRQWQQLGLQLNVAINVS 900

Query: 770  SR-CLNS-----DETISHIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLG 823
            SR C+N+     D+ +     C N + + P  + +EITE+ LM +     + L  +R LG
Sbjct: 901  SRQCVNARGMGFDQVLQE---CFNRHHINPRNVHIEITESMLMGDASHCLSTLEAIRRLG 957

Query: 824  VRVSLDDFGTGYSSLQYLARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLAT 883
             ++ +DDFGTGYSSL YL + PI  +KIDR+FV+  L    +  +V+ I+ + +SL +  
Sbjct: 958  SQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALSNNSNTNLVKAIVMMGQSLEMEL 1017

Query: 884  VAEGVETAAQLSALRGMGVDYLQGYCLGRPLP 915
            VAEG+ET AQ + LR +G  Y QGY + +PLP
Sbjct: 1018 VAEGIETEAQWNLLRDLGCHYAQGYLISKPLP 1049