Pairwise Alignments

Query, 489 a.a., RND efflux system, outer membrane lipoprotein, NodT family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 472 a.a., RND transporter from Burkholderia phytofirmans PsJN

 Score =  363 bits (931), Expect = e-105
 Identities = 206/464 (44%), Positives = 286/464 (61%), Gaps = 15/464 (3%)

Query: 2   LATAMLAATLAGCSFGPDHARPAMDLPDAWRPGTADTGTVQDG---WWKGFGDPALDALV 58
           L  A+ A   AGC+ GPD+ RPA+D P ++R  + D   V  G   WW  F DP LD L+
Sbjct: 8   LLAAVCACWFAGCTVGPDYHRPAVDTPSSFRYASPDAEVVDQGAVQWWSQFNDPVLDGLI 67

Query: 59  ASALDHNRDLAKAIANVDEARAQLGLARANQMPRVDAQ-GASQRQRYSLEGFNSFDESTR 117
             ALD N+DLA A A VDE   +L   RA   P+V A  G  + +     GF     +  
Sbjct: 68  QRALDQNKDLAIAAARVDEFYGRLMTTRAGLFPQVGANFGGGRGRSVPAPGF-----APA 122

Query: 118 VQDLHNAGGVLSYEMDLWGRYRRASEAARADLLSTMAARDTVRLALTAQVARTYFDLRAY 177
           V +      + S+E+DL+GR RR +EAARAD L T AA+   R+AL + VA +Y  LR  
Sbjct: 123 VGNQVQLDVMASWEIDLFGRLRRLTEAARADYLGTQAAQQATRIALISSVATSYLLLRDL 182

Query: 178 DQQLQVARDTLASRESTQELRKVRFELGLTSELDYRQAIAEAAAARSTVHTLQYNVSASE 237
           DQ+L++A+ TLASR     L + RF  G+ S+L   QA +E  +A+++V+  Q  ++  E
Sbjct: 183 DQRLEIAKSTLASRADALSLFQERFTGGVVSQLQVSQAKSEYESAQASVYAFQQQIAQQE 242

Query: 238 AALGVLTGKSPRDIVTGTVERGLAVDAVPVPPSVPAGLPSALLERRPDIVQAEQQLAAAS 297
            AL +L G +P     G + RG  +  +  P ++PAGLPS+LLERRPDI+QAEQ L +A+
Sbjct: 243 NALSLLLGDNP-----GPIPRGKPLTQLSAP-AIPAGLPSSLLERRPDILQAEQALVSAN 296

Query: 298 ANIGVAKAAYFPSISLTGLLGYESSDLTRLFTGPAGTWRYAGSVSMPIFDFGRIKAGVEA 357
           A+IG A+A YFPSISLTG+ G  S+ L+ L+TGPA  W +AG++S PIF  G I   V  
Sbjct: 297 ASIGAARAQYFPSISLTGMFGAASTALSGLWTGPARIWSFAGAISQPIFTGGAITGSVRT 356

Query: 358 AEARQRAALAGYEKAVQDAFREAQDALVANRKARGVVEAQTTQVTALRRSLHLAKLRYDN 417
           AEA+Q+ AL  YE+A+Q AF + ++ALV   + R  ++A   QV AL +   LA+  Y+ 
Sbjct: 357 AEAQQQEALFSYEQAIQSAFADVENALVGVARVRDQLQATNRQVEALAQYASLARDLYEG 416

Query: 418 GYSSYLEVLDAERSLFDVEISLASAQRDQLVAVVEVYRALGGGW 461
           GY+SYLEVLDAERSLF+ ++  +  Q  QL  +V +Y+ALG GW
Sbjct: 417 GYTSYLEVLDAERSLFNAQLQQSQLQDQQLAEIVALYKALGYGW 460