Pairwise Alignments

Query, 489 a.a., RND efflux system, outer membrane lipoprotein, NodT family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 495 a.a., outer membrane efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score =  247 bits (631), Expect = 6e-70
 Identities = 152/462 (32%), Positives = 253/462 (54%), Gaps = 17/462 (3%)

Query: 8   AATLAGCSFGPDHARPAMDLPDAWRPG-----TADTGTVQD----GWWKGFGDPALDALV 58
           A ++AGC+ GPD+ RP + LP+ ++       TA+ G V++     W   + DP L +L+
Sbjct: 38  ALSVAGCAMGPDYQRPELVLPNQYQAQMLSQTTAEQGNVKEVSALSWRHFYQDPVLISLI 97

Query: 59  ASALDHNRDLAKAIANVDEARAQLGLARANQMPRVDAQGASQRQRYSLEGFNSFDESTRV 118
             AL +N DL  A + +  AR+++ +  +   P V  +   +R   S     +   ST +
Sbjct: 98  EHALANNLDLQMAQSRLLAARSKMTVVDSALWPEVSVKAGYERSLDSGATSTNPSPSTTL 157

Query: 119 QDLHNAGGVLSYEMDLWGRYRRASEAARADLLSTMAARDTVRLALTAQVARTYFDLRAYD 178
               + GG +S+E+DLWG  RRASEAA AD LS +       ++L + +A  Y++    +
Sbjct: 158 ----DLGGAVSWELDLWGANRRASEAAMADYLSEVEKLRLTYVSLISDIASRYYEWLDIE 213

Query: 179 QQLQVARDTLASRESTQELRKVRFELGLTSELDYRQAIAEAAAARSTVHTLQYNVSASEA 238
           Q+  V+ DT+  R+   ++ K+R   G+ S LD RQA  E  + + T+ TL Y       
Sbjct: 214 QRYSVSIDTVGLRQKELDIAKLRHANGVISGLDVRQAEVELQSTKVTLPTLDYERKYKIN 273

Query: 239 ALGVLTGKSPRDIVTGTVERGLAVDAVPVPPSVPAGLPSALLERRPDIVQAEQQLAAASA 298
            L +L G+    + +    +GL  + + +P  +  G+PS LL  RPD+  AEQQ+ AA+A
Sbjct: 274 QLHILLGEYDYALPS---PQGLP-ENMGLPYELNTGVPSELLTLRPDVKIAEQQMIAANA 329

Query: 299 NIGVAKAAYFPSISLTGLLGYESSDLTRLFTGPAGTWRYAGSVSMPIFDFGRIKAGVEAA 358
            +G+AKAA+FP  +++G+ G E+  L  +F     TW   G +S PIF+ G+I A  + A
Sbjct: 330 EVGIAKAAFFPKFTISGVYGRENDHLKDIFDSNGVTWSLLGGISAPIFNRGKIAAEYDIA 389

Query: 359 EARQRAALAGYEKAVQDAFREAQDALVANRKARGVVEAQTTQVTALRRSLHLAKLRYDNG 418
               + ++  Y   V  A+ +  DAL   ++A+  ++AQ   V +      LA+LRY NG
Sbjct: 390 TEAAKQSMLSYRNVVLTAYFDVNDALNNLKRAQEAIKAQKELVESSSAYARLARLRYQNG 449

Query: 419 YSSYLEVLDAERSLFDVEISLASAQRDQLVAVVEVYRALGGG 460
            ++ L+++DA+R LF  +++ +   RD+ +A + +YRALGGG
Sbjct: 450 VATSLDLMDAQRQLFSAQLAYSEILRDKQLAKIALYRALGGG 491