Pairwise Alignments

Query, 315 a.a., shikimate 5-dehydrogenase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 278 a.a., shikimate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

 Score =  101 bits (251), Expect = 2e-26
 Identities = 84/272 (30%), Positives = 122/272 (44%), Gaps = 25/272 (9%)

Query: 12  YGIIGHPLGHTMSPLLHNWGFSLLDVPAVYMAWPLEPGRVGDFITAVRTLPI---RGASV 68
           Y + G+P+ H+ SP +H           +Y A  +    V  F  A +       RG +V
Sbjct: 8   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVP---VDGFTEAAKHFFAQGGRGCNV 64

Query: 69  TIPHKQAVLPLLDGVSDRARAVGAVNTL-YWRDGQLLGENTDVTGFLAPLRQRAAAGWRC 127
           T+P K+      D +++RAR  GAVNTL    DG++LG+NTD  G +  L  +     + 
Sbjct: 65  TVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVL-LKG 123

Query: 128 ERALVLGNGGAARAVLAGLRELGPAGDGVVRAVGVTGRNAEKAAPLAAEFGAEVVDWDAR 187
              L++G GGAAR VL  L +  PA    +     T   AE+ A L A +G        +
Sbjct: 124 ATILLIGAGGAARGVLKPLLDQQPAS---ITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ 180

Query: 188 VHWGADLVVNTTPMGMSGERQGDTAFPEQGFAAQGVAAGGDGRRGLAYDLVYNPLRTRFL 247
           +    D+++N+T   + GE     A     F++          R + YD++Y    T F 
Sbjct: 181 LKQSYDVIINSTSASLDGEL---PAIDPVIFSS----------RSVCYDMMYGKGYTVFN 227

Query: 248 SEAADAGW-DTQDGLGMFVEQGREQFRLWTGL 278
             A   G     DGLGM V Q  E F LW GL
Sbjct: 228 QWARQHGCAQAIDGLGMLVGQAAESFMLWRGL 259