Pairwise Alignments

Query, 315 a.a., shikimate 5-dehydrogenase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 275 a.a., shikimate dehydrogenase from Marinobacter adhaerens HP15

 Score =  105 bits (263), Expect = 9e-28
 Identities = 93/292 (31%), Positives = 132/292 (45%), Gaps = 40/292 (13%)

Query: 7   LPRELYGIIGHPLGHTMSPLLHNWGFSLLDVPAVYMAW--PLEPGRVGDFITAVRTLPIR 64
           +  +LY ++G+P+ H+ SP +H+   S    P  Y A   PL+     DF   VR    R
Sbjct: 1   MTNDLYAVVGNPISHSKSPRIHSLFASETGEPVEYTAIQAPLD-----DFAGTVRQFFER 55

Query: 65  GA---SVTIPHKQAVLPLLDGVSDRARAVGAVNTLYWRD-GQLLGENTDVTGFLAPLRQR 120
           G    +VT+P K+    L D  ++RA   GA NTLY  D G+L  +NTD  G +  L   
Sbjct: 56  GGKGLNVTVPFKEDAWKLADRRTERAENAGAANTLYLDDEGRLTADNTDGCGIVRDLVVN 115

Query: 121 AAAGWRCERALVLGNGGAARAVLAGLRELGPAGDGVVRAVGVTGRNAEKA-------APL 173
                   R LVLG GGA R VL  +    PA      A+ +  R   KA        P+
Sbjct: 116 HGVVLGQARILVLGAGGAVRGVLGPILAEHPA------AITIANRTVSKADALVNLFKPV 169

Query: 174 AAEFGAEVVDWDARVHWGADLVVNTTPMGMSGERQGDTAFPEQGFAAQGVAAGGDGRRGL 233
           A E       ++ +     D+++N    G S   QGD            ++    G + +
Sbjct: 170 AGETALSACGFE-QPREPFDVIIN----GTSASLQGD---------LPPLSPEVLGEQTV 215

Query: 234 AYDLVYNPLRTRFLSEAADAG-WDTQDGLGMFVEQGREQFRLWTGLELPAEG 284
            YD++Y+   T F   A + G  +  DGLGM VEQ  E FR+W G+  PA G
Sbjct: 216 VYDMMYSLQTTTFNQWALEQGAQNVHDGLGMLVEQAAESFRIWRGVN-PATG 266