Pairwise Alignments

Query, 521 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 474 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  251 bits (642), Expect = 3e-71
 Identities = 144/405 (35%), Positives = 229/405 (56%), Gaps = 31/405 (7%)

Query: 11  REVINTINDGFFLVGPDGRILMANPALERLTGYEAGELVGQTCAVLNCDACVRSRSLGGG 70
           R +++ +++G +    DG  +  NPA ER+TG++A EL+G+T    +           G 
Sbjct: 12  RLLLDAVSEGIYGFDLDGHAVFINPAAERMTGWQADELLGKTIHNFH-----HHSHADGS 66

Query: 71  HW----CRLFDRKDEHRKRC----TLVRRDGTSITVLKNAKVLKEDGRVIAAVETITDIS 122
           H+    C ++    + + R        R+DG+S  V  ++  + +DG++   V    DIS
Sbjct: 67  HYPHEDCPIYQTLKDGKAREISDEVFWRKDGSSFPVHYSSTPVWQDGKLKGVVAIFRDIS 126

Query: 123 AVVEKDR-------RIEELSRLLGSDE-----------GFAGMVGTSPAMQRVFKIIERA 164
              + ++       +++ LS  L S+            G + + G+S  +Q + K I   
Sbjct: 127 LQKQTEQSLRQALEQVQALSEQLASENSLLQAELEDKRGPSQITGSSDCIQNLQKQIRLV 186

Query: 165 AESDAPVLVLGASGTGKELAARAIHELGRRKNGAYVQLNCAALNEALLESELFGHVRGAF 224
           A +D+ VL+ G +GTGKEL AR +H+L  R++   + +NCAA + +LLESELFGH +GAF
Sbjct: 187 ANTDSTVLIQGENGTGKELVARELHQLSSRRDKPMISVNCAAFSASLLESELFGHEKGAF 246

Query: 225 TGAIRDRQGRFEAAHGGDIFLDEIGDIPLPIQVKLLRVLETKRIERVGDNASREVDVRII 284
           TGA   R+GRFE AH G +FLDE+ ++ L  Q KLLRV++ +  ERVG +   +VD+R+I
Sbjct: 247 TGASNRRKGRFELAHKGTLFLDEVAELSLEAQSKLLRVIQEQEFERVGGSERIKVDIRLI 306

Query: 285 AATNRDLGRLVRAGRFREDLLFRINVIPIHLPPLADRREDIPLLAAHFLKGIRERDGRDV 344
           AAT+ DL + V  G FR DL +R+NV P+ +PPL  R  DIP L    L+ + ++ G+ +
Sbjct: 307 AATHHDLQKRVEQGLFRMDLFYRLNVFPLKVPPLRQRAGDIPELVQQLLRSLSQKLGKPL 366

Query: 345 TGLTPEALRLLTAYGWPGNVRELRSALEYACVIAEGGRLGVEHLP 389
            G+   +L+ L  Y WPGNVREL++ LE   ++     L +  +P
Sbjct: 367 AGVDAVSLKRLQQYSWPGNVRELQNLLEREAILTHQPVLKMSSIP 411