Pairwise Alignments

Query, 521 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  256 bits (654), Expect = 1e-72
 Identities = 133/282 (47%), Positives = 185/282 (65%), Gaps = 3/282 (1%)

Query: 111 VIAAVETITDISAVVEKDRRIEELSRLLGSDEGFAGMVGTSPAMQRVFKIIERAAESDAP 170
           ++ +V+   ++S V    R+   L   L    G   ++G S A++ V  +++RAA S + 
Sbjct: 112 LLLSVQNAAELSRV---HRQYRALRANLEERYGTHQIIGRSKAIREVLDMVDRAAPSRST 168

Query: 171 VLVLGASGTGKELAARAIHELGRRKNGAYVQLNCAALNEALLESELFGHVRGAFTGAIRD 230
           VL+ G SGTGKEL ARAIH    R +G +V +NC ALN  +LESELFGH +G+FTGA+  
Sbjct: 169 VLITGESGTGKELVARAIHFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAM 228

Query: 231 RQGRFEAAHGGDIFLDEIGDIPLPIQVKLLRVLETKRIERVGDNASREVDVRIIAATNRD 290
           R+GRFE A GG +FLDEIG++   +QVKLLRVL+ +R ERVG     EVD+R++AATN+D
Sbjct: 229 RRGRFEQADGGTLFLDEIGELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKD 288

Query: 291 LGRLVRAGRFREDLLFRINVIPIHLPPLADRREDIPLLAAHFLKGIRERDGRDVTGLTPE 350
           L + V  G FREDL +R+NV+ + LPPL +RREDIPLL  HF++ +   +G      TPE
Sbjct: 289 LQKEVENGTFREDLYYRLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPE 348

Query: 351 ALRLLTAYGWPGNVRELRSALEYACVIAEGGRLGVEHLPQHI 392
           A   LT Y WPGN+R+L++ +E   V+     +GV+ LP  I
Sbjct: 349 AHDYLTGYEWPGNIRQLQNVVERCLVLVASDTVGVDDLPPEI 390