Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

 Score =  134 bits (337), Expect = 5e-36
 Identities = 112/397 (28%), Positives = 177/397 (44%), Gaps = 35/397 (8%)

Query: 82  CGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKMEFAFSQD 141
           C  C     PY+EQ+  K++ + +    I    D   LP + S A+  FRNK +      
Sbjct: 11  CTSCHLCAQPYSEQVTNKDQQLREL---IAPATDVQWLPPVTS-ADTAFRNKAKMVVLGA 66

Query: 142 RDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDSRQDGFWRF 201
               + LG+     + +  +T C L       ++  +    R +G+P ++  ++ G  +F
Sbjct: 67  AHAPI-LGIEDAQGQPLSLVT-CPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKF 124

Query: 202 LVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEALRARFPEV 261
           +++            T +E  GQ        +     R     + + R    L A FP +
Sbjct: 125 ILL------------TRSENSGQ-------FMLRFVARSHAVLERIERNLPTLIAAFPMI 165

Query: 262 TGVVHSLRLDPEQIAY--GERVLAVDGEAVLTERLGGNDLLLGPDSFFQTNTAAAGLLYD 319
              V S+ + P  +A   GE  + +     L E      +++ P SFFQTN   A  LY 
Sbjct: 166 E--VISVNIQPVHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYA 223

Query: 320 EARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNC 379
            AR          +WDL+ GVG  ALH A    AV G EI PEA+  A+ +A    I N 
Sbjct: 224 TARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNL 283

Query: 380 SFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIVYVSCNPATM 439
           SF + D     + +      +P +V+V+PPR GL  ++   + A  P+ I+Y SCNP TM
Sbjct: 284 SFAALDSAKFSQSQMS----APELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTM 339

Query: 440 ARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476
            +D A  ++  Y +   +  D+FPH+ H E + LL R
Sbjct: 340 VKDIAELSS--YQMIRVQWFDMFPHTDHAEVLTLLVR 374