Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

 Score =  181 bits (458), Expect = 6e-50
 Identities = 138/468 (29%), Positives = 218/468 (46%), Gaps = 50/468 (10%)

Query: 14  LTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPVQCA 73
           +T++ L   G  +     + +FV G LPG+ V  +LT  K ++A   L  VL+PS  + A
Sbjct: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79

Query: 74  PFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNK 133
           PFCAH+  CGGC  Q L  A Q+  K++ +   + +  G   A   P+ +   ++G+R +
Sbjct: 80  PFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSD--DQGYRRR 137

Query: 134 MEFAFSQDRDGQ-LHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDD 192
              +   D+  Q L LG RR+ S+A+V++T C +  P    ++  +  L  E     W  
Sbjct: 138 ARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSE-----WSQ 192

Query: 193 SRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAA--QAVSRL 250
             + G    +                   +G +T       + +  RH GA   Q   RL
Sbjct: 193 PERLGHVELV-------------------KGDNT-------RVLVLRHLGALIEQDQQRL 226

Query: 251 AEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQTN 310
            +     F     +   L L+  ++ +      V GEA   E  G     L P  F Q N
Sbjct: 227 TD-----FASQNQLTLYLMLEAGELQH------VQGEAPYCEETGSRLSFL-PSHFIQVN 274

Query: 311 TAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARAN 370
            A    +  +A       P + V DL+ G+G   L LA+ A AV G E   E V  A  N
Sbjct: 275 RAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHN 334

Query: 371 AARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIV 430
           A  N I N +F   ++   +      +    + V++DP RAG  E +V+ +SA   +R+V
Sbjct: 335 AKLNQINNVAFYQANLEQDMTSASWAQQKFAK-VLLDPARAGA-EGIVDQLSALGAKRVV 392

Query: 431 YVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTRTG 478
           YVSCNPAT+ARD+    ++G+ L++   +D+FPH+ H+E +AL  + G
Sbjct: 393 YVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKKG 440