Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 451 a.a., 23S rRNA m(5)U-1939 methyltransferase from Pseudomonas syringae pv. syringae B728a

 Score =  174 bits (442), Expect = 4e-48
 Identities = 147/471 (31%), Positives = 210/471 (44%), Gaps = 54/471 (11%)

Query: 9   GDLLELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPS 68
           G    LT++ L+  GR +   EG+  FVAG L G+ V AR+   + +  EA  + V   S
Sbjct: 24  GKKQRLTIERLSDDGRGIAFLEGKTWFVAGSLAGEEVEARVLNARGKVVEARTERVFTAS 83

Query: 69  PVQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLP----ILAS 124
            ++ AP C +FG CGGC+ Q +P+ EQL  K+R + + L     LR ANV+P       S
Sbjct: 84  AMRRAPACEYFGRCGGCSVQHVPHEEQLALKQRMLAEQL-----LRVANVVPDEWAAPLS 138

Query: 125 PAERGFRNKMEFAFSQDRDGQ-LHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELAR 183
            AE  +R +   A   D   + L +G R  AS+ +V I  C +       +V+A++ +  
Sbjct: 139 GAELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVSIEHCPV-------LVQALQPIMN 191

Query: 184 ESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGA 243
           E  LPG   S    F +  V+   EL                      L+Q    RH GA
Sbjct: 192 E--LPGMLKS----FSKPQVLGHVELFSGVATAVLLRHTASLVEADLALLQAFCSRH-GA 244

Query: 244 AQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGP 303
              +    E      P   G     RL+P  +    R                      P
Sbjct: 245 QLWLHGEGEPQ----PASPGDTLGYRLEPWNLQLAWR----------------------P 278

Query: 304 DSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEA 363
             F Q N +    + ++A +  A   D+ V DL+ G+G  AL LA  A  V   E     
Sbjct: 279 GDFIQVNASVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATM 338

Query: 364 VNDARANAARNNILNCSFVSGDVRASLRR-ERPGEGVSPRIVVVDPPRAGLHEDVVEAVS 422
           V  A  NA  N++ N  F   D+   L + +   EG S   V++DPPR G  E VV  + 
Sbjct: 339 VERAAVNAMSNDLHNVRFFQADLSQPLTQADWAAEGFSA--VLLDPPRDGAFE-VVRQIR 395

Query: 423 AHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVAL 473
                R++YVSCNPAT+ARDA     +GY L+ A  +D+FP + HVE +AL
Sbjct: 396 KTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMAL 446