Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 443 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  163 bits (412), Expect = 1e-44
 Identities = 142/472 (30%), Positives = 199/472 (42%), Gaps = 62/472 (13%)

Query: 12  LELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPVQ 71
           + L V  L   G  +  H+G+VVF+ G LPG+ V  +LT  K+ +A A L  V E SP +
Sbjct: 19  IALKVQRLDHLGAGIAEHQGKVVFIPGALPGETVEVQLTEQKKNYARAKLQRVSEASPDR 78

Query: 72  CAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFR 131
             P C  +G CGGC  Q L    QL +K + + D + R    +   V     S     +R
Sbjct: 79  QTPPCPWYGKCGGCDLQHLSLPRQLEYKRQALGDIVSR-SAAQTVTVNTDEVSGDSWHYR 137

Query: 132 NKMEFAFSQDRD-GQLHLGLRRRASRAVVDITECH-LQTPLTVRIVEAVRELARESGLPG 189
            +   A   D++  QL LG R   S++VV I  C  L  PL+  I      L R  G   
Sbjct: 138 RRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSELISPFATLLNRLKG--- 194

Query: 190 WDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSR 249
                           +  LG                             H    QA + 
Sbjct: 195 ----------------KQRLG-----------------------------HLELTQAANG 209

Query: 250 LAEALRARFP--EVTGVVHSLRLDPEQIAY------GERVLAVDGEAVLTERLGGNDLLL 301
           L   LR   P  +    + S   D  QIA       GE      G  +   +L G  L  
Sbjct: 210 LFAVLRVTAPLAQSDKKLLSAFADERQIALLLQGNEGELEFLSSGHELPYYQLDGLKLAF 269

Query: 302 GPDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITP 361
            P +F Q N      +  +A         + V DL+ GVG  +L LA+    V G E  P
Sbjct: 270 APGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFSLPLAKQGAEVVGVEGVP 329

Query: 362 EAVNDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAV 421
           E V  A+ NAA N + N SF   D+   L  E P  G   ++ ++DP RAG +E  ++ +
Sbjct: 330 EMVAQAKQNAAINGLDNLSFYCADLSEDLAAE-PWLGKIDKL-LLDPARAGAYES-LKWL 386

Query: 422 SAHQPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVAL 473
              +P +++YVSCNPA++ARD+ L    GY L     VD+FP + H E +AL
Sbjct: 387 KKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTRLGLVDMFPQTHHSEGMAL 438