Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  147 bits (371), Expect = 6e-40
 Identities = 123/408 (30%), Positives = 182/408 (44%), Gaps = 41/408 (10%)

Query: 76  CAHF--GDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNK 133
           C +F  G C  C     P  EQL  KE  +   LG  G   D  + P+  S  E GFRNK
Sbjct: 3   CDYFNRGLCQSCRLMSKPVTEQLLEKEARLTHLLG--GLPVDERLAPV--SGPEFGFRNK 58

Query: 134 MEFAFSQDRDGQLH---LGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGW 190
            +        G  H   LG+     + V D++ C L       ++  +    R +G+P +
Sbjct: 59  AKMVVM----GAAHAPVLGIPGPDGQPV-DLSHCPLYPQDMQALLLELTSFVRRAGIPPY 113

Query: 191 DDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRL 250
              +  G  +F+++            +   GE          +     R   A   + R 
Sbjct: 114 RVDKAKGELKFILLTR----------SAVRGE---------FMLRFVLRSKDAIPRIERE 154

Query: 251 AEALRARFPEVTGVVHSLRLDPEQIAY--GERVLAVDGEAVLTERLGGNDLLLGPDSFFQ 308
              L A FP +  V  S+ L P  +A   GE  + +     L E   G  L + P SFFQ
Sbjct: 155 LPKLLADFPAIKVV--SVNLQPVHMARLEGEEEIFLTQATRLDEVFNGVPLFIRPKSFFQ 212

Query: 309 TNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDAR 368
           TN   A  LY  A +        ++WDL+ GVG   LH A  +  V G EI  EA++ A+
Sbjct: 213 TNPEVASRLYATAAKWVDELSPKSLWDLFCGVGGFGLHCANESLPVTGIEIEAEAIDCAK 272

Query: 369 ANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPER 428
            +AA   + N SF + D       ++  E   P +++V+PPR G+ E++ E +SA  P  
Sbjct: 273 TSAAAMGLDNLSFAALDSTDFAMGQQAQE--VPEVIIVNPPRRGIGEELCERLSAFGPRA 330

Query: 429 IVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476
           I+Y SCNP T+A+D AL +  GY +   +  D+FPHS H E + LL +
Sbjct: 331 IIYSSCNPETLAKDLALIS--GYRIARVQLFDMFPHSDHFEVLCLLLK 376