Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 379 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Pantoea sp. MT58

 Score =  147 bits (371), Expect = 6e-40
 Identities = 114/407 (28%), Positives = 186/407 (45%), Gaps = 34/407 (8%)

Query: 70  VQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERG 129
           + CA + A+   C  C W + PY  QL  K+  +   L           LP + SP ++ 
Sbjct: 1   MHCALYDAN--RCRSCQWLEKPYPIQLSDKQSMLEQLLAE---QPVTAWLPPVTSP-QQA 54

Query: 130 FRNKMEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPG 189
           FRNK +   S   +  + LGL  R   AV D+ +C L       +  A++     +GL  
Sbjct: 55  FRNKAKMVVSGSVERPV-LGLIHRDGEAV-DLCDCPLYPASFQPVFTALKPFIARAGLTP 112

Query: 190 WDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSR 249
           ++ +R+ G  +FL++ E + G                     ++     R     + +  
Sbjct: 113 YNVARKRGELKFLLITESQQGG--------------------IMLRFVLRSTAKLEQLRA 152

Query: 250 LAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQT 309
               L+ + P++  +  +++     I  GE  +A+     L E   G  L + P SFFQT
Sbjct: 153 ALPWLQQQLPQLAVISANIQPVHMAILEGEEEIALTPAQSLAENFNGVPLWIRPQSFFQT 212

Query: 310 NTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARA 369
           N   A  LY  AR    A P +++WDL+ GVG   LH A     + G EI+ EA+  A+ 
Sbjct: 213 NPQVASALYATARDWVRALPVNSMWDLFCGVGGFGLHCATPEMELTGIEISAEAIKCAQR 272

Query: 370 NAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERI 429
           +A    +    F + D  +       G    P++V+V+PPR G+ E + + +S   P+ +
Sbjct: 273 SAEMLGLEKVQFAALDSTSF----ATGRDAVPQLVLVNPPRRGIGEALCDYLSQMAPDYL 328

Query: 430 VYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476
           +Y SCNP TM +D A  +A  Y + + +  D+FPH+ H E + LLTR
Sbjct: 329 LYSSCNPQTMVQDIARLSA--YEVTKVQLFDMFPHTAHFEVLTLLTR 373