Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  142 bits (358), Expect = 2e-38
 Identities = 118/412 (28%), Positives = 180/412 (43%), Gaps = 38/412 (9%)

Query: 70  VQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERG 129
           VQC  F    G C  C    LP A+QL  K   +   L       +   LP +   +  G
Sbjct: 5   VQCGYF--ERGQCQSCRHIKLPMAQQLAAKNLELQQLLAPFVDKTEPQFLPPVVGDSS-G 61

Query: 130 FRNKMEFAFSQDRDGQLH---LGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESG 186
           FRNK +        G  H   LG+   +  AV  + +C L       ++  +    +++G
Sbjct: 62  FRNKAKMVAL----GAAHAPVLGIVSPSGEAV-SLCDCLLYPTDMQALLHRLERFVQQAG 116

Query: 187 LPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQA 246
           +P +   +  G  +F+++   ++                  G   L   +  R   A   
Sbjct: 117 IPPYRVDKAKGELKFILLTRSQVR-----------------GEYMLRFVLRSRD--AIAR 157

Query: 247 VSRLAEALRARFPEVTGVVHSLRLDPEQIAY--GERVLAVDGEAVLTERLGGNDLLLGPD 304
           + R    L A +P++  V  S+ L P  +A   GE  + +     L ER     L + P 
Sbjct: 158 IERELPTLMAEYPQIKVV--SVNLQPVHMAILEGEEEIFLTENTRLEERFNDVPLFIRPK 215

Query: 305 SFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAV 364
           SFFQTN   A  LY  AR   A     ++WDL+ GVG   LH A     + G EI  EA+
Sbjct: 216 SFFQTNPQVAAKLYQTAREWVADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIEAEAI 275

Query: 365 NDARANAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAH 424
             A+ +A    +    F++ D     + E       P +++V+PPR G+ E +  ++S  
Sbjct: 276 ACAKMSAQLMGLDKVEFMALDSTDFAKGE--AAQTKPELIIVNPPRRGIGESLCHSLSEF 333

Query: 425 QPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476
            P+ I+Y SCNP T+A+D  L   RGY L + +  DLFPHS H E +ALL +
Sbjct: 334 APKAILYSSCNPKTLAKD--LGHIRGYRLTKVQLFDLFPHSDHFEVLALLVK 383