Pairwise Alignments

Query, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 449 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  176 bits (445), Expect = 2e-48
 Identities = 142/456 (31%), Positives = 212/456 (46%), Gaps = 46/456 (10%)

Query: 23  GRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPVQCAPFCAHFGDC 82
           G  + +H+G+VVF+ G LP + V+A+LT  K+ +A A L  V  PS  +  P C H+  C
Sbjct: 30  GAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSAERVTPLCPHYQSC 89

Query: 83  GGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKMEFAFSQDR 142
           GGC  Q +  A Q   K   +VD + +  G  + N +P L       +R +   A   D+
Sbjct: 90  GGCDLQHMSLAGQREHKSAALVDIMAKFAGA-EGNSVPALTGEGWH-YRRRARLATLFDK 147

Query: 143 DG-QLHLGLRRRASRAVVDITECH-LQTPLTVRIV---EAVRELARESGLPGWDDSRQDG 197
           +  QL LG R  +S  VV I  C  L  PL   I    + + +LA +S L   +    D 
Sbjct: 148 NTKQLSLGFRASSSNQVVPIDSCLVLAKPLADLIAPFAKLLNQLAAKSSLGHVELIDADN 207

Query: 198 FWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEALRAR 257
              F V+R  +   D      A+   Q                        ++   L+  
Sbjct: 208 -GHFAVIRITKPLNDKDMAKLAQFAEQH-----------------------QIHICLQDN 243

Query: 258 FPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQTNTAAAGLL 317
             E  GV  +L L   Q+        +D  A  T       L   P +F Q N      +
Sbjct: 244 NGEFHGVNGTLLLPVYQL--------LDDNADATPV----SLTFTPGNFVQVNAQINKTM 291

Query: 318 YDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNIL 377
             +A    A  P + + DL+ G+G  +L LA+    V G E  PE V+ AR NAA N + 
Sbjct: 292 VAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLS 351

Query: 378 NCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIVYVSCNPA 437
           N +F  GD+ A L  E P  G   ++++ DP RAG  E + + +   +P ++VYVSCNPA
Sbjct: 352 NLTFYHGDLSADLSCE-PWMGKIDKLLL-DPARAGAFESL-QWLKKMKPRQVVYVSCNPA 408

Query: 438 TMARDAALFTARGYALQEARPVDLFPHSPHVECVAL 473
           ++ARD+A+   RGY LQ+   +D+FP + H+E +AL
Sbjct: 409 SLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMAL 444