Pairwise Alignments

Query, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  314 bits (805), Expect = 3e-90
 Identities = 200/473 (42%), Positives = 268/473 (56%), Gaps = 44/473 (9%)

Query: 6   VLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGMNGMEL 65
           +L+VEDE  +   ++  L +  YEV+ AG  ++AQ+      FDL+++DLRLPG  G EL
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERYSIPGFDLIVSDLRLPGAPGTEL 63

Query: 66  LEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLIAVERYFRFLDLK 125
           ++    L  GT V+++T++  +  AV ++K GA D++ KPF  D +L  V R    L   
Sbjct: 64  IK----LAEGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQTVAR---ILSDH 116

Query: 126 RENARLRGE-------------RDDGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGS 172
           +++A ++ +             RDD   IG    M  +F +IR +A +   VL+ G SG+
Sbjct: 117 QQSAAVQAQPARSASATAAGSGRDDIGIIGHCAPMQDLFGKIRKVAPTDSNVLIQGESGT 176

Query: 173 GKELVAGALHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAAD 232
           GKELVA ALH LS+R   P I +NCAA+PE L+ESELFGHEKGAFTGA   R G  EAAD
Sbjct: 177 GKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEAAD 236

Query: 233 GGTLFFDEAGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGT 292
           GGTLF DE GE+PL  QA+LLRVL++ E+  VG    +KVDVR + AT RDL+     G 
Sbjct: 237 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKTGQ 296

Query: 293 FREDLYYRINVVPVTLPPLRERGGDVALLAERFLRRFCAQHDR----QVTFSEQARNALL 348
           FREDLYYR++V+ + LPPLRERG DV  +A+ FL R   Q +R     + FS  A  A+ 
Sbjct: 297 FREDLYYRLHVIALKLPPLRERGSDVLEIAKAFLAR---QGERMGSDDLHFSRDAEQAIR 353

Query: 349 AYDYPGNVRELRNAIERAVILCAEDKIHVGHLPKRIRDATQASQEQQP-----------E 397
            Y +PGNVREL NAIERA IL    +I    L   I          +P           E
Sbjct: 354 HYSWPGNVRELENAIERAAILSESPEIDAELLGIDIELDELDDDFDEPLGSIRGIANSNE 413

Query: 398 ETRFVQLADGVAQFEKKRILEALQKTGGRRIRAAELLGITRKQLWLKLKELDI 450
            T  + L D    F    +LE   +        A  LGI+RK LW + + L I
Sbjct: 414 PTEDLSLEDYFQHF----VLE--HQDHMTETELARKLGISRKCLWERRQRLGI 460