Pairwise Alignments

Query, 445 a.a., UDP-N-acetylmuramoylalanine/D-glutamate ligase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 465 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD from Phaeobacter inhibens DSM 17395

 Score =  152 bits (384), Expect = 2e-41
 Identities = 149/480 (31%), Positives = 208/480 (43%), Gaps = 72/480 (15%)

Query: 13  KGDLVVVVGAGRSGMAAARLLHRMGARVRLLERNADGVPADFVRWAAEAGVEIATGDHAP 72
           +G  V V+G GRSG A AR L   GA     + N         R  AE    +       
Sbjct: 8   EGAKVAVLGLGRSGFATARALREGGAEPVCWDDNPGA------RARAEVEGFVCRDLQKA 61

Query: 73  TQFEGARAVVPSPGMAVSKLRP-------LLAQGPDAPEI----MAEMELAWRQLDGEP- 120
             F+   ++V SPG+     +P       L+A  P   +I     +     W + D  P 
Sbjct: 62  GAFDDIASLVVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQAPR 121

Query: 121 VLAVTGTSGKTTTVSLCAAMLRAQGLSVFLGGNIGTPLSEYVLSVAHGGADGQGRADVLV 180
           ++AVTG++GK+TTV+L   +L+  G    L GNIG  + +          D  G   ++V
Sbjct: 122 IVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDI---------DPPGSGGIVV 172

Query: 181 IEISSFQLQACTTFRPRVAMLLNISENHLDYHADMAEYIDAKFRLFRCMEEG--DLAIFG 238
           +E+SS+Q        P VA+  N+S +HLD HA M  Y  AK RLF    EG  D AI G
Sbjct: 173 LELSSYQTDLARALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFA---EGGPDRAIIG 229

Query: 239 QGVRD-LVAARDLKP-----RTLFFDAAARR-------FPRTCLL--------------- 270
               + L  A  L       R +   A+ +        F R   L               
Sbjct: 230 VDEDEGLYLAGQLSEAASDDRVIRISASQKLTGLGWQVFARKGFLSEYRKGRQAASIDLR 289

Query: 271 ------GGHNQANIEAAWQACREFGVTPEAAEKAVADFAPMEHRLEAVAERNGVLWVNDS 324
                 G HN  N  AA+ A R  G+ P   E A+A +  + HR + +A   GV +VNDS
Sbjct: 290 QMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQTIATHAGVRYVNDS 349

Query: 325 KCTTVEALRVALQAFDRPVVLMVGGKFKGGDLASLLPLLCGRVRAVVGFGASREHFEGAW 384
           K T +++   AL AFD  +  + GG  K G L +L     G+VR     G     F    
Sbjct: 350 KATNLDSAVKALSAFDN-IRWICGGLEKDGGLEALRG-QTGKVRKAYVIGREAAGF---- 403

Query: 385 MGQGDFPMSWHPALEPAVAEAAALARPGDAVVMAPATSSFDLFANYKERGHAFRRAVEAL 444
             Q D        +  AVA A+A A  GD V++APA +SFD + N+++RG  F   V  L
Sbjct: 404 AMQLDVEAEVCITMAEAVARASAEAETGDTVLLAPAAASFDQYDNFEQRGEDFIAEVAKL 463