Pairwise Alignments

Query, 1030 a.a., CheA signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 725 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

 Score =  332 bits (850), Expect = 8e-95
 Identities = 252/797 (31%), Positives = 381/797 (47%), Gaps = 112/797 (14%)

Query: 223  IDEAREMAENLSSGLLELERNPTEQGELVNDLFRFFHNLKGNSGIIGFAELNSLTHEAET 282
            + EARE+   + + LL+ E     + + ++ +FR  H +KG++G+  F  +   TH  E 
Sbjct: 11   VQEARELLVAMEAALLQTEMEGPSR-DSIHAIFRAAHTIKGSAGLFAFDSIVQFTHHLEH 69

Query: 283  LLNNVRRGEMTGSHELVDLLLLVVDLLEALVTRIDPVSGNVTPFDISVILECLRKAVAGG 342
            +L  VR   +     L+ LLL   D +  LV  I+       P          R+A    
Sbjct: 70   VLERVREERLALDSHLMSLLLQCSDYIGELVDAIERGQEAEEP-------NAERRAALLA 122

Query: 343  DITLPEGLGGRRSGGSVAEAPAPEAGAPGTDDDADAPSPPVAPGYDPDDVALFINTVRQQ 402
            ++             SV    A   GA G+ + A A        Y    + L  N +R  
Sbjct: 123  ELDAVAAFSVDHGPASVPVPLAALRGAAGS-ESATADQAATRVPYWHLSLQLNENVLRDG 181

Query: 403  MDNVGVALKTLAVDGTQREYVDALYR--CLVTIQNSSGYMGLDDIRVYAERTAGLVDQAR 460
            +D +               Y+ +L R   LVT++++                A +  ++ 
Sbjct: 182  LDPLSFL-----------HYLRSLGRIVALVTVESA------------IPEAAAMDAESC 218

Query: 461  FSGMDFSLMVDLMEQETSIIGDMLEKQIARISMPAPAQAPEAAPAAPEAKAAPAPAAEAK 520
            + GM+  L  D   Q    + + + +  +RI +  P +AP +A A   A+ AP  AA   
Sbjct: 219  YLGMEVCLASDSTLQTLENVFEFV-RDDSRIDI-LPPRAPLSAYAERLARLAPQDAARLA 276

Query: 521  AVAAPPAAKTDVTTDARAAASVDAEDEDAEDDDAAVVTISSVTGTPAPAAAVKPAAPAPA 580
            A     A +     D     S++A               +S T + A AAAV+P A    
Sbjct: 277  A-----AWRGLALFDQTQWQSLEA---------------ASATPSDALAAAVEPMA---- 312

Query: 581  SAVAAPAASAKPAAPVAPARPAAPTAPSAPAAPAGGQGAAAAAQAQQAGAAKASSTIRVD 640
                                                +G     +A     A+    I+++
Sbjct: 313  -----------------------------------AEGVLQRPRALDERRAQEQKFIKIE 337

Query: 641  HEKLDHLMNLIGELIINRNRYTMLARRLEDDTNVVIAEVAQDLSETTYAMARISDDLQDT 700
              KLD L++L+GEL+I      ++ARR +D              E T A+  + + ++D 
Sbjct: 338  VSKLDQLIDLVGELVIAGASARLIARRRKD----------SQFEEATQAIDTLMEQIRDA 387

Query: 701  IMKVRMVPVSSVFSRFPRLVRDLSRKSGKEVDLILEGEETELDKSVVEVIGDPLVHLIRN 760
             + +RMV ++ VF RFPR+VRD++R  GK++DL++ G +TELDKS+VE + DPL+H++RN
Sbjct: 388  ALTLRMVQINEVFQRFPRIVRDIARDLGKDIDLVMTGSDTELDKSMVERLADPLMHIVRN 447

Query: 761  AVDHGVESEDERVAKGKKAKGKVTLRAYHKGNSVAIEIEDDGKGIDPEKMREVAVRKGII 820
            A+DHG+E   ER+A GK AK  + L A H+  SV IE+ DDG+G+D E +   AV +G+ 
Sbjct: 448  AIDHGIEPAAERLAAGKPAKASLQLNAIHESGSVVIEVMDDGRGMDREAILAKAVAQGLA 507

Query: 821  TPDEAKAMDDREAMELIFAPGFSSAEKITDISGRGVGMDVVRTNIKNLKGSVSIHSEIGK 880
            +PD    + D E    +F PGFS+A ++T++SGRGVGMDVVR NI+ L G VSI +  G+
Sbjct: 508  SPD--AELSDAEIYRFVFEPGFSTARQVTELSGRGVGMDVVRRNIEALHGEVSIDTGRGR 565

Query: 881  GTRFTLSLPLTLAIIDALMVNVAGEMYAIPLDAVSETTKIEARRLTDVKGRKAVTLRGEV 940
            GT   L LPLTLAII    V V   ++ IPLD V E   +  ++     G   V +R E 
Sbjct: 566  GTVVRLRLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQQ----PGSHIVNVRDEP 621

Query: 941  LGIASLSELLGLPKGDKQDVLSVVVIHDNDRRLGLVVDRLLERQEIVIKPLGAYLGDLKG 1000
            L    L EL  LP  ++    S+V++     R GL+VD LL   + VIKPLG   G +KG
Sbjct: 622  LPFVPLRELFDLPARER-GRNSLVIVQYGPLRAGLLVDGLLGECQAVIKPLGRLFGKVKG 680

Query: 1001 ISGATIMGDGSVILILD 1017
            +SG+TI+GDG V LILD
Sbjct: 681  LSGSTILGDGRVALILD 697



 Score = 59.7 bits (143), Expect = 7e-13
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 15  IVEAKEHLETIEPNLLELEKAPDNLALLNEIFRPMHSLKGASGFLGLNRINGLAHRAENI 74
           + EA+E L  +E  LL+ E    +   ++ IFR  H++KG++G    + I    H  E++
Sbjct: 11  VQEARELLVAMEAALLQTEMEGPSRDSIHAIFRAAHTIKGSAGLFAFDSIVQFTHHLEHV 70

Query: 75  MDELRKGDMTVTSEIMDVILSATDALRQMVDNLDTTGGEGDVETE---SIIATIDAIMAG 131
           ++ +R+  + + S +M ++L  +D + ++VD ++      +   E   +++A +DA+ A 
Sbjct: 71  LERVREERLALDSHLMSLLLQCSDYIGELVDAIERGQEAEEPNAERRAALLAELDAVAAF 130

Query: 132 GAPPA-APRPAPAAPAPAPAPEPAPAAEPVVAPAP 165
                 A  P P A     A   +  A+      P
Sbjct: 131 SVDHGPASVPVPLAALRGAAGSESATADQAATRVP 165