Pairwise Alignments

Query, 485 a.a., cysteinyl-tRNA synthetase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 463 a.a., cysteinyl-tRNA synthetase from Herbaspirillum seropedicae SmR1

 Score =  429 bits (1102), Expect = e-124
 Identities = 232/482 (48%), Positives = 301/482 (62%), Gaps = 32/482 (6%)

Query: 1   MQLYNTLTRKKEHFEPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDV 60
           +++YNTL R K+ F P  PGKV +YVCG+T YD CHIGHAR  VVFD++ R+LR +G +V
Sbjct: 4   LKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASGYEV 63

Query: 61  TFARNFTDVDDKIITRANQEGLTSQEVAEKYIATFYEDMDRLNVLRADLEPRATTHIEEM 120
           T+ RN TD+DDKII RA + G T  ++  ++I    ED   L V R D EPRAT ++ +M
Sbjct: 64  TYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYVPQM 123

Query: 121 ISLCVRLIEQDKAYATPSGDVYFRVRAFPGYGKLSGRDVDDLRSGARVAPGEEKEDPLDF 180
           + L  +L +   AY    GDV + VR FPGYGKLSG+ +DDLR+G RV     K DPLDF
Sbjct: 124 LDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDPLDF 183

Query: 181 ALWKAAKPGEP---FWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFPHHENE 237
            LWKAAKP EP    W+SPWG GRPGWHIECSAMS   L    DIHGGGQDL FPHHENE
Sbjct: 184 VLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHHENE 243

Query: 238 IAQTEAALGKDFVRYWVHNGFVQVNAEKMSKSLGNFRTIRDILENYLPETLRYFLLTKHY 297
           IAQ+E A    FV YW+HNGFV+++ EKMSKSLGNF TIRD+L+ Y PE LR+F+L  HY
Sbjct: 244 IAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILRAHY 303

Query: 298 RSPIDFTFESMDEAEKNLKRIYEALGLLHAELEREKWTSGPLPKDVTEEFEGLRQAFADA 357
           RSP++++   +D+A + L R+Y AL  +  +       +G L   V +E   +R   ADA
Sbjct: 304 RSPLNYSDAHLDDARQALTRLYTALKDVPPQ-------AGGL---VADEAHAVR--LADA 351

Query: 358 MEDDMNTAAALGHVFTMVRLANRILDNKGQRKTEGARAFFRAVLDEAATWFAVLGVFGRE 417
           + DD NT  A+  +F +    NR       R    AR        +      +LG+  RE
Sbjct: 352 LNDDFNTPVAIAVLFELANEVNR------SRSPVQAR--------QLKALAGILGLLQRE 397

Query: 418 PAGFLAELRACRVARKGIDPAKVEELLQARINARADKDFARADAIRDEIAALGIEVRDTP 477
           P  +   L+    A +G+  A++E L+ AR  A+A K+FA AD IR E+   GI + D P
Sbjct: 398 PGEY---LKGGVAAAEGLGEAEIEALIAARKAAKAGKNFAEADRIRAELTEAGIILEDKP 454

Query: 478 SG 479
            G
Sbjct: 455 GG 456