Pairwise Alignments

Query, 492 a.a., DNA repair protein RadA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  304 bits (779), Expect = 4e-87
 Identities = 182/454 (40%), Positives = 259/454 (57%), Gaps = 15/454 (3%)

Query: 2   KLRETYVCTACGARAPQWRGQCPACKEWNTLELTVAPREGKAGARPG---ASSVGAQSRA 58
           K +  YVC  CG   P+W+GQC AC EWNT+      R G A    G   A   GA S  
Sbjct: 3   KNKTAYVCNECGQDFPRWQGQCSACHEWNTI---TEVRLGAASPGRGTKFAGYAGAGSSE 59

Query: 59  QPLKDVADHGAEP-FGSGLDALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGAVAAA 117
               D  D  A P   S    LDRVLG G+VPG+AIL+GG PG GKSTLLLQ    +A  
Sbjct: 60  VKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQ 119

Query: 118 GRGVLYLSGEESLPQLKARAARLGVLHDELMAVATTRLDDVLPHLEGPEAPALLIVDSVQ 177
               LY++GEESL Q+  RA RLG+  ++L  ++ T ++ +   +   E+P +++VDS+Q
Sbjct: 120 -MPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQIC-EIALQESPKVIVVDSIQ 177

Query: 178 TVSSDRAEGLPGNVSQVRAVSTEIVEACKRSGTTVLLVGHVTKDGALAGPRLLEHLVDTV 237
            +        PG+VSQVR  ++ +    K+ G  V++VGHVTKDG+LAGP++LEH +D  
Sbjct: 178 VMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCS 237

Query: 238 ISIEGDRRQMFRLLRVLKNRFGPNQELLVFRMVEQGMEVVEDPSTFFLGARDPALSGTAL 297
           +  EGD    +R LR  KNRFG   EL VF M E+G++ V +PS  FL   +   SG+ +
Sbjct: 238 VMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLV 297

Query: 298 VMAVDGQRPLAVEVQALVTRSYLAIPRRTGLGFDVNRLHLLLAVLEKRLRLNFGQVDIYA 357
           ++  +G RPL VE+Q LV  S ++ PRR  +G D NRL +LLAV+ +   L     D++ 
Sbjct: 298 MVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFV 357

Query: 358 KIGGGMKLQDPGMDLGLVAAVLSSFYDLPLPERAVFWGEVDLNGQVRPVAAHTIRRDQAR 417
            + GG+K+ +   DL L+ A++SSF    LP   V +GEV L+G++RPV     R  +A 
Sbjct: 358 NVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAA 417

Query: 418 RLGYTPILHPADDAARGVPT------VAALQDAL 445
           + G+   + P  +  +  P       V+ L +AL
Sbjct: 418 KHGFKRAIVPRANVPKKPPVGMEVVGVSKLSEAL 451