Pairwise Alignments

Query, 492 a.a., DNA repair protein RadA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 461 a.a., DNA repair protein RadA from Herbaspirillum seropedicae SmR1

 Score =  335 bits (858), Expect = 3e-96
 Identities = 185/450 (41%), Positives = 264/450 (58%), Gaps = 8/450 (1%)

Query: 2   KLRETYVCTACGARAPQWRGQCPACKEWNTLELTVAPREGKAGARPGASSVGAQSRAQPL 61
           K++  Y CT CG  + +W GQCPAC +WNTL  T+    G         S+   +    L
Sbjct: 3   KVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVLSL 62

Query: 62  KDVADHGAEPFGSGLDALDRVLGKGLVPGAAILVGGEPGIGKSTLLLQVAGAVAAAGRGV 121
            D+       FG+G++  DRVLG GLVPG   L+GG+PGIGKSTLLLQ    ++   + V
Sbjct: 63  ADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK-V 121

Query: 122 LYLSGEESLPQLKARAARLGVLHDELMAVATTRLDDVLPHLEGPEAPALLIVDSVQTVSS 181
           LY+SGEES  Q+  RA RL V   EL   A  +L+ +L  L     P + ++DS+QT+ S
Sbjct: 122 LYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATL-AEHKPEVAVIDSIQTLYS 180

Query: 182 DRAEGLPGNVSQVRAVSTEIVEACKRSGTTVLLVGHVTKDGALAGPRLLEHLVDTVISIE 241
           D     PG+V+QVR  + ++    K SG T+++VGHVTK+GALAGPR+LEH+VDTV+  E
Sbjct: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240

Query: 242 GDRRQMFRLLRVLKNRFGPNQELLVFRMVEQGMEVVEDPSTFFLGARDPALSGTALVMAV 301
           GD    FRL+R  KNRFG   EL VF M E+G++ V +PS  FL   +  + G+ +++  
Sbjct: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300

Query: 302 DGQRPLAVEVQALVTRSYLAIPRRTGLGFDVNRLHLLLAVLEKRLRLNFGQVDIYAKIGG 361
           +G RPL VE+QALV  S++   RR  +G + NRL +LLAVL +   +     D++    G
Sbjct: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360

Query: 362 GMKLQDPGMDLGLVAAVLSSFYDLPLPERAVFWGEVDLNGQVRPVAAHTIRRDQARRLGY 421
           G+K+ +P  DL ++ A+ SS  + PLP   V +GEV L G++RP      R  +A +LG+
Sbjct: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420

Query: 422 T----PILHPADDAARGVPTVAA--LQDAL 445
           +    P  +    A  G+  +A   + DAL
Sbjct: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDAL 450