Pairwise Alignments

Query, 557 a.a., AMP-dependent synthetase and ligase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 556 a.a., AMP-binding protein from Herbaspirillum seropedicae SmR1

 Score =  233 bits (594), Expect = 1e-65
 Identities = 177/564 (31%), Positives = 277/564 (49%), Gaps = 38/564 (6%)

Query: 11  DYKEFCATFRI---------DAPDTFNFAFDVLDPIAAADPGRLCIAHVDDAGVRRDYTF 61
           DY +  A FRI         D     N   +  D     D   + +  V   G  + Y+F
Sbjct: 12  DYADVYAGFRIETLREQFQGDFETGINACVECCDRHVKGD--NIALEFVSLHGEHQQYSF 69

Query: 62  AWMAEASAKLANALRLRGIRKGDRVMLVLYRRIEFWVSMLALHRLGAVAIPAPAQLTPKD 121
           A +   +A++AN LR +GI+ G  V  +L R  E   ++L   R GAV  P      PK 
Sbjct: 70  AQVRSMAARVANLLRQQGIQPGQIVAGMLPRTPELLATVLGTLRAGAVYQPLFTAFGPKA 129

Query: 122 IVFRVERAKTRCVIVDHSITERVEAARPDCPGLAVCVQVGGDALPRGWVDYDTIFTPAEA 181
           I  R+  +    ++ + +  ++++    +CP +   V+   D L  G +D+         
Sbjct: 130 IEHRLALSGASLIVTNVANRDKLDEIA-NCPQVCT-VRESNDPLRAGDIDFRAAVDAQSD 187

Query: 182 RFPRPESPLEFAGGEDPLLIFFSSGTTGMPKMVEHVHTYPLGHLLT-GMYWHD---LVPG 237
            F    +P+    G D +L+  +SGTTG  K V      PL  L    +Y  +   L+P 
Sbjct: 188 DF----APV-LRSGADLMLMMSTSGTTGAAKGVP----VPLSALQAFSVYMREAVGLLPQ 238

Query: 238 DLHLTLADTGWGKAVWGKFYGQWMAGASVFVYDFRGKFEPAALLDVLAAHAVTTFCAPPT 297
           D    +AD GW   ++    G    G  +   +    F  +   + +    +T+    PT
Sbjct: 239 DKFWNMADPGWAYGLYYAIIGPLAIGHGITFNE--AAFTVSGTYETIRRLGITSLAGAPT 296

Query: 298 VYRFLVR--QDLSAYDLSKLRHCTTAGELLNDSVFHDWKAATGLEIHEGYGQTETTLQIA 355
            YR ++   ++ +A    +LR  ++AGE LN  V   + +A  + IH+ YGQTE  + + 
Sbjct: 297 AYRMMMAAGEEAAASVKGRLRAVSSAGEPLNAEVVRWFASALDVPIHDHYGQTELGMVVN 356

Query: 356 TLPCMTPKA--GSIGRPMPGWDVVLQDAAGNICPPGEEGEICVRVAEGLPVGLFRGYLEE 413
               +  +   GS G  MPG+ VV+ D         + GE+ + +A   P+  F GY ++
Sbjct: 357 NHHALRHEVVPGSAGFAMPGYRVVVLDENHQELGANQPGELAIDIARS-PLYWFSGYWKQ 415

Query: 414 PEKTASVMFGGYYHTGDKAWMDEDGYYWFLGRVDDLIKSSGYRIGPFEVESALVAHPAVV 473
                +    GYY TGD   ++ +G   F+GR DD+I S+GYRIGPF+VESAL+ HPAV 
Sbjct: 416 DTPAIA---HGYYSTGDNVELEPNGSISFIGRSDDVITSAGYRIGPFDVESALLEHPAVA 472

Query: 474 EAAVTGVPDPLRGQAVKATVVLAAGYTASDALTKELQDHVKKVTAPYKYPRIIDYVAELP 533
           + AV G+PDP R + VKA VVL+  + ASDAL ++L  HVK+  + + YPR I+++  LP
Sbjct: 473 DVAVIGLPDPERTEIVKAFVVLSDQFKASDALREQLAQHVKRRLSAHAYPRAIEFLDALP 532

Query: 534 KTISGKIKRAEIR--ERDQQASGP 555
           KT SGK++R  +R  E D++A  P
Sbjct: 533 KTPSGKLQRFVLRKMEADRRAGHP 556