Pairwise Alignments

Query, 174 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 359 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 46  AIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLGLYY 105
           AI  Y++  +L P++    + +G +Y  +     A + L  A  + P+   +Y NL +  
Sbjct: 159 AINTYQRWQQLEPNNWQPRNEMGKIYLQQRQFTNALQVLQAATRLAPREADIYSNLAIAQ 218

Query: 106 LN-HDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEIN 158
           L  ++   A+   + ++ +DP N     + G  Y  +GD   +  N+ +A+E+N
Sbjct: 219 LGLNNPRAALTSLQSSISLDPRNPRTLLKAGDIYLVLGDREAANRNYRRAFELN 272



 Score = 43.5 bits (101), Expect = 4e-09
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 42  DNDKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNL 101
           D + A   Y +A +LN + A  +     +   +GD   A  YL  AL +EP+NP  +  L
Sbjct: 257 DREAANRNYRRAFELNRNSAKTLDRYTQILLDQGDATLATVYLRDALRLEPRNPDFHLRL 316

Query: 102 GLYYLNHDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIGD 143
           GL YL             A  + PE     +Q    Y   GD
Sbjct: 317 GLAYL-------------ARGLKPEARSSLNQAALLYQQRGD 345



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 18  GCFEQNNLEKSQEM---AEIGFAYIGI-DNDKAIEYYEKAIKLNPDDANAISFLGTLYDG 73
           G ++Q  L   Q+    + IG+ Y  + D  +A   +E+AI ++   A       T Y  
Sbjct: 59  GLYQQAQLIDGQDARIASAIGYLYTELGDFRQAALSFERAIAMDSQTAAFAFGAATAYAN 118

Query: 74  EGDREKAYEYLTKALEMEPKNPWMYYNLGLYYLNHDDNM-AIGCFEKALRIDPENECCWS 132
            G+   A  Y  ++L ++ K    Y  L        + + AI  +++  +++P N    +
Sbjct: 119 LGEYAAAERYYEQSLRLDNKRAEAYRGLATVQQRRGNLVGAINTYQRWQQLEPNNWQPRN 178

Query: 133 QLGYTYYDIGDYTNSKLNFEKAYEINPK--DQYSDM 166
           ++G  Y     +TN+    + A  + P+  D YS++
Sbjct: 179 EMGKIYLQQRQFTNALQVLQAATRLAPREADIYSNL 214



 Score = 36.2 bits (82), Expect = 6e-07
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 113 AIGCFEKALRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKA 154
           A+G +++A  ID ++    S +GY Y ++GD+  + L+FE+A
Sbjct: 57  ALGLYQQAQLIDGQDARIASAIGYLYTELGDFRQAALSFERA 98