Pairwise Alignments

Query, 174 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 393 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 22  QNNLEKSQEMAEIGFAYIGI-DNDKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKA 80
           + +++  +    +G  Y    D + AI Y E A + NP + + +  LG  Y    +  K 
Sbjct: 241 EKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVKLRNYNKG 300

Query: 81  YEYLTKALEMEPK--NPWMY--YNLGLYYLNHDDNMAIGCFEKALRIDPENECCWSQLGY 136
            E++ KAL+ + +    W Y  Y L L   +++   AI C++KA+ I+  +   W  L  
Sbjct: 301 LEFMEKALDKDSEYAKAWCYKGYILNLLERHYE---AIDCYKKAISINKNDSKFWMHLSN 357

Query: 137 TYYDIGDYTNSKLNFEKAYEI 157
            Y  IG    SK  +E A  +
Sbjct: 358 VYKTIGKEDYSKEAYENAVNL 378



 Score = 48.1 bits (113), Expect = 2e-10
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 31  MAEIGFAYIGIDN-DKAIEYYEKAIKLNPDDANAISFLGTLYDGEGDREKAYEYLTKALE 89
           +A+ G A +G+   D+A+E YEK +K++P D      +G  +      EKA ++    L 
Sbjct: 148 LAKKGTALVGLKQFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLN 207

Query: 90  MEPKNPWMYYNLG--LYYLNHDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIGDYTNS 147
               +  +  + G  L  L    N A+  + K L    +N   W ++G  YYD  DY  +
Sbjct: 208 EHKGDFGVTLSKGDALRKLGKT-NEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETA 266

Query: 148 KLNFEKAYEINP 159
               E A E NP
Sbjct: 267 IYYLELANERNP 278



 Score = 43.1 bits (100), Expect = 6e-09
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 60  DANAISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLG-LYYLNHDDNMAIGCFE 118
           D   +  +GT Y   G  +K+ EY  K L  EPKNP  +Y  G  Y +     +A   +E
Sbjct: 11  DPKKLLEIGTEYYNNGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYQMLGKSKLAQDSYE 70

Query: 119 KALRIDPEN 127
           KAL I P +
Sbjct: 71  KALSIRPND 79



 Score = 36.2 bits (82), Expect = 7e-07
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 93  KNPWMYYNLGL-YYLNHDDNMAIGCFEKALRIDPENECCWSQLGYTYYDIGDYTNSKLNF 151
           K+P     +G  YY N     +I  F K L  +P+N   W   G  Y  +G    ++ ++
Sbjct: 10  KDPKKLLEIGTEYYNNGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYQMLGKSKLAQDSY 69

Query: 152 EKAYEINPKD 161
           EKA  I P D
Sbjct: 70  EKALSIRPND 79



 Score = 35.0 bits (79), Expect = 2e-06
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 18 GCFEQNNLEKSQEMAEIGFAYIGIDN-DKAIEYYEKAIKLNPDDANAISFLGTLYDGEGD 76
          G F     +  +++ EIG  Y       K+IEY+ K +   P + +A  F G  Y   G 
Sbjct: 2  GLFSIFKSKDPKKLLEIGTEYYNNGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYQMLGK 61

Query: 77 REKAYEYLTKALEMEPKN 94
           + A +   KAL + P +
Sbjct: 62 SKLAQDSYEKALSIRPND 79



 Score = 32.7 bits (73), Expect = 8e-06
 Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 36/169 (21%)

Query: 35  GFAYIGIDNDK-AIEYYEKAIKLNPDDA-------------------------------N 62
           G AY  +   K A + YEKA+ + P+D                                 
Sbjct: 53  GNAYQMLGKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSESDDE 112

Query: 63  AISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLG--LYYLNHDDNMAIGCFEKA 120
            I  LG  Y   G  E+A  +    LE +P+   +    G  L  L   D  A+  +EK 
Sbjct: 113 IIEILGDAYLKTGKFEEAILHYNDILERKPRYKEILAKKGTALVGLKQFDE-ALEIYEKV 171

Query: 121 LRIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEINPKDQYSDMIEK 169
           L+I P +   W  +G  +Y +  Y  + + F   Y    K  +   + K
Sbjct: 172 LKISPYDTEVWKNIGNAFYTVKKYEKA-IQFYDMYLNEHKGDFGVTLSK 219