Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 573 a.a., Ribosomal protein S1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 9   GDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWI-KNIRDH--IKKGQRVVAKV 65
           G   +G V ++  +GAF+EL   PG EG+VH+SE+S  W  KN+     +   Q V   +
Sbjct: 287 GTKFVGRVTNITDYGAFVEL--EPGVEGLVHVSEMS--WTKKNVHPGKIVSTSQEVEVMI 342

Query: 66  MRVTPHKNQIDLSLKR 81
           + V P K +I L LK+
Sbjct: 343 LDVDPDKRRISLGLKQ 358



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 8   EGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVMR 67
           EG+I+ G V ++  +GAF++L    G +G++H++++S   I +  + +  GQ V  +V+R
Sbjct: 201 EGEILEGVVKNITDYGAFVDL---GGVDGLLHVTDISWKRINHPTEALSIGQTVKVQVIR 257

Query: 68  VTPHKNQIDLSLKR 81
                 +I L +K+
Sbjct: 258 FNAETQRISLGMKQ 271



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 9/77 (11%)

Query: 9   GDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKN----IRDHIKKGQRVVAK 64
           G  + G + ++  FG FI L      +GM+H+S++   W ++    ++D+ KKG  V AK
Sbjct: 374 GTEVEGEIKNITEFGLFIGLTG--DIDGMIHLSDLD--WNRSGDEAVKDY-KKGDVVQAK 428

Query: 65  VMRVTPHKNQIDLSLKR 81
           V+ V   K +I L +K+
Sbjct: 429 VLDVDVEKERISLGVKQ 445