Pairwise Alignments

Query, 265 a.a., translation initiation factor IF-2 subunit alpha from Methanococcus maripaludis S2

Subject, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

 Score = 47.4 bits (111), Expect = 7e-10
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 3   NDFPE---EGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVS-SGWIKNIRDHIKKG 58
           +DF E   +GD + G +  +  FG FI L    G +G+VH+S++S +G  +      KKG
Sbjct: 355 DDFAERYAKGDKVTGKIKSITDFGIFIGL--DGGIDGLVHLSDISWNGTGEEAVSDYKKG 412

Query: 59  QRVVAKVMRVTPHKNQIDLSLKRATDQQKKVKVQEWKRFQRAEKLLQFASEKLGKTIEEG 118
             + A V+ V P + +I L +K+  D      + + K+       +     K G TIE  
Sbjct: 413 DEISAVVLSVDPERERISLGVKQTEDDPFNAYLADKKKGAIVTGTVTAVDAK-GVTIELA 471

Query: 119 WEAAGY 124
               GY
Sbjct: 472 ETVEGY 477



 Score = 40.4 bits (93), Expect = 8e-08
 Identities = 19/75 (25%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 7   EEGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWIKNIRDHIKKGQRVVAKVM 66
           +EG  + G V ++  +GAF++L    G +G++HI++++   +K+  + +  G  +  KV+
Sbjct: 190 QEGQAVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVL 246

Query: 67  RVTPHKNQIDLSLKR 81
           +    + ++ L LK+
Sbjct: 247 KYDRERTRVSLGLKQ 261



 Score = 37.7 bits (86), Expect = 5e-07
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 8   EGDIIIGNVIDVKSFGAFIELLEYPGKEGMVHISEVSSGWI-KNIRDH--IKKGQRVVAK 64
           E   + G V ++  +G F+E+ E  G EG+VH+SE+   W  KNI     +  G  V   
Sbjct: 276 ENTKLTGRVTNLTDYGCFVEIEE--GVEGLVHVSEMD--WTNKNIHPSKVVNLGDEVEVL 331

Query: 65  VMRVTPHKNQIDLSLKR 81
           V+ +   + +I L LK+
Sbjct: 332 VLDIDEERRRISLGLKQ 348