Pairwise Alignments

Query, 533 a.a., sodium:solute symporter family protein from Methanococcus maripaludis S2

Subject, 572 a.a., actP-like component of lactate uptake system (from data) from Shewanella amazonensis SB2B

 Score =  119 bits (297), Expect = 4e-31
 Identities = 154/600 (25%), Positives = 236/600 (39%), Gaps = 112/600 (18%)

Query: 6   LNVIVLIYLLV----IGYLGYKGWKGTSSAEDYMVGGRKIHPFVMAMSYGA------TFI 55
           ++V  L YL+V      Y+G   W    S +++ V G  + P +  M+  A      +FI
Sbjct: 1   MDVKTLTYLIVGLSFALYIGIAIWSRAGSTKEFYVAGGGVPPVMNGMATAADWMSAASFI 60

Query: 56  STAAIVGFGGFSGLFGMSLLWLTFLNIFLGIFIAFVFFGKRTRKMGHNLNALTFPELLAK 115
           S A IV F G+ G   + L+  T   + L + +A        RK G      T P+ + +
Sbjct: 61  SLAGIVSFVGYDG--SVYLMGWTGGYVLLALCMA-----PYLRKFGK----FTVPDFIGE 109

Query: 116 RFESKFIQWFSGLLIFCAMPI---YAAAVLIGAARFIETTLNISFDVALLVFSIIIAVYV 172
           R+ S+  +  +   + CA+ I   Y A  + G        L +  D  + +   ++  Y 
Sbjct: 110 RYYSQAARTVA---VVCAIFICFTYIAGQMRGVGVVFSRFLEVDVDTGVYIGMAVVFFYA 166

Query: 173 VMGGLKGVMYTDAFQGTIMFFGML-----FLLYMTYDI---LGGVTTAHQAISNMSGLVP 224
           V+GG+KG+ YT   Q  ++ F  +       + MT  I   LG       A  N +G+  
Sbjct: 167 VLGGMKGITYTQVAQYCVLIFAFMVPAIFISVMMTGHIIPQLGFGAELIDAAGNGTGVYL 226

Query: 225 AN-LASVGHAGWTSMPTFGSPMWWTIVSSIILGVGIGVLAQPQLIVRFMTVKSNRELNRA 283
            + L  +      S  T GS     + + I   + +G    P +IVRF TV   ++   +
Sbjct: 227 LDKLDGLSTELGFSQYTEGSKSMIDVFA-ITAALMVGTAGLPHVIVRFFTVPRVKDARSS 285

Query: 284 VLIGAVFILIATGTAYVVGTLSNVYFMNT-EGVLSIGATVSEA--------------FPT 328
                VFI I   T   +   S V  + T  G  S G     A              +  
Sbjct: 286 AGWALVFIAIMYTTVPALAAFSRVNMIETINGPDSTGVAYETAPGWIKNWEKTGLIKWDD 345

Query: 329 GNSDSIMPLYINKA---------------------MPEWFIYIFLVSLLAAAMSTISSQF 367
            N D  M  Y  K                      +P W I +     LAAA+ST +   
Sbjct: 346 KNGDGKM--YYTKGDANEMNIDRDIMVLATPEIANLPAWVIALVAAGGLAAALSTSAGLL 403

Query: 368 HAQGTSIGRDVYETICGKKGL-------NSVIITRLGIIVAIVIAAILGYILPGGIVARG 420
               TS+  D+      KKG          ++  R+   V IVIA   G I P G VA  
Sbjct: 404 LVISTSVSHDLM-----KKGFAPNISDKQELLYARIAAAVGIVIAGYFG-INPPGFVAAV 457

Query: 421 TALFFGLCSAAFLPAYALGLFWKRTTKEGAIAGLLTGTFVSLFCLVFIHQAESAA----- 475
            A  FGL +++  PA  +G+F K+  KEGAIAG++ G   +   +V+      AA     
Sbjct: 458 VAFAFGLAASSLFPAIVMGIFSKKMNKEGAIAGMVVGLGFTAAYIVYFKFVNPAANVPAN 517

Query: 476 --LGISKMLIGRDVLISAMPWPYVDPMVISLPLAFIATVIVSLLTKAPSKEHLKKCFKGI 533
              GIS   IG                +I + + F   VIV+ LT A    H+++  +GI
Sbjct: 518 WLFGISPEGIG----------------MIGMLINFAVAVIVAKLTSA-VPAHVEEMVEGI 560