Pairwise Alignments

Query, 533 a.a., sodium:solute symporter family protein from Methanococcus maripaludis S2

Subject, 498 a.a., sodium/proline symporter (RefSeq) from Shewanella loihica PV-4

 Score =  154 bits (388), Expect = 1e-41
 Identities = 119/462 (25%), Positives = 210/462 (45%), Gaps = 41/462 (8%)

Query: 9   IVLIYLLVIGYLGYKGWKGTSSAEDYMVGGRKIHPFVMAMSYGATFISTAAIVGFGGFSG 68
           I  + +L IG   Y+  + T     Y++GGR++ P V A+S GA+ +S   ++G  G   
Sbjct: 11  IYFLAMLAIGLFAYR--RSTDDVSGYILGGRQVSPQVTALSAGASDMSGWMLMGLPGAMF 68

Query: 69  LFGMSLLWLTFLNIFLGIFIAFVFFGKRTRKMGHNLN-ALTFPELLAKRFE--SKFIQWF 125
           L G   +++  L + LG  + ++    + R      N ALT PE  AKRF   S  ++  
Sbjct: 69  LVGFETIYIA-LGLLLGALVNYLIVAPKLRVYTEVANNALTIPEFFAKRFHDPSCNVRII 127

Query: 126 SGLLIFCAMPIYAAAVLIGAARFIETTLNISFDVALLVFSIIIAVYVVMGGLKGVMYTDA 185
           S  +I     +Y +A L+   +  E+   +++++ L++   ++  Y ++GG   V  TD 
Sbjct: 128 SAAIIVIFFTLYTSAGLVAGGKLFESAFEVNYELGLVITLGVVVSYTLLGGFLAVSLTDF 187

Query: 186 FQGTIMFFGMLFLLYMTYDILGGVTTAHQAISNMSGLVPANLASVGHAGWTSMPTFGSPM 245
            QG IMF  ++ +             A+Q  SN   ++        +  + S+P FG  M
Sbjct: 188 VQGCIMFVALILV----------PVVAYQEFSNADKMM--------NFAYESIPHFGEAM 229

Query: 246 WWTIVSSII--LGVGIGVLAQPQLIVRFMTVKSNRELNRAVLIGAVFILIATGTAYVVGT 303
               +  +I  L  G+G   QP +IVRFM ++S  ++  A  IG  ++     T  ++G 
Sbjct: 230 QNVTLLGLISALSWGLGYFGQPHIIVRFMAIRSVSDIKTAKNIGMSWM-----TVTIIGA 284

Query: 304 LSNVYFMNTEGVLSIGATVSEAFPTGNSDSIMPLYINKAMPEWFIYIFLVSLLAAAMSTI 363
           L+        G++ I           + ++I  ++             L ++LAA MSTI
Sbjct: 285 LAT-------GLVGIAYANKFDMKLSDPETIFIVFSELLFHPLISGFLLAAILAAIMSTI 337

Query: 364 SSQFHAQGTSIGRDVYETICGKKGLNS--VIITRLGIIVAIVIAAILGYILPGGIVARGT 421
           SSQ     +S+  D+Y  +  K+      V + R G+    ++A++L       I++  +
Sbjct: 338 SSQLLVSSSSLTEDIYRVVSKKEASEEEMVKLGRFGVAGVAIVASLLALDRSNSILSLVS 397

Query: 422 ALFFGLCSAAFLPAYALGLFWKRTTKEGAIAGLLTGTFVSLF 463
             + G   AAF P     L+ K  T + A+AG++ G    LF
Sbjct: 398 NAWAGF-GAAFGPLVLFSLYKKNLTHKAAVAGIVAGAATVLF 438