Pairwise Alignments

Query, 533 a.a., sodium:solute symporter family protein from Methanococcus maripaludis S2

Subject, 572 a.a., actP-like component of L-lactate and L-malate uptake system (from data) from Shewanella loihica PV-4

 Score =  111 bits (278), Expect = 6e-29
 Identities = 144/580 (24%), Positives = 228/580 (39%), Gaps = 103/580 (17%)

Query: 6   LNVIVLIYLLV----IGYLGYKGWKGTSSAEDYMVGGRKIHPFVMAMSYGA------TFI 55
           ++V  L YL+V      Y+G   W    S +++ V G  +HP +  M+  A      +FI
Sbjct: 1   MDVQTLTYLIVGFTFALYIGIAIWSRAGSTKEFYVAGGGVHPVMNGMATAADWMSAASFI 60

Query: 56  STAAIVGFGGFSGLFGMSLLWLTFLNIFLGIFIAFVFFGKRTRKMGHNLNALTFPELLAK 115
           S A IV F G+ G   + L+  T   + L + +A        RK G      T P+ +  
Sbjct: 61  SLAGIVSFVGYDG--SVYLMGWTGGYVLLALCMA-----PYLRKFGK----FTVPDFIGD 109

Query: 116 RFESKFIQWFSGLLIFCAMPI---YAAAVLIGAARFIETTLNISFDVALLVFSIIIAVYV 172
           R+ S+  +  +   + CA+ I   Y A  + G        L +  D  + +   ++  Y 
Sbjct: 110 RYYSQAARTVA---VVCAIFICFTYIAGQMRGVGVVFSRFLEVEVDTGVYIGMAVVFFYA 166

Query: 173 VMGGLKGVMYTDAFQGTIMFFGML-----FLLYMTYDILG----GVTTAHQAISNMSGLV 223
           V+GG+KG+ YT   Q  ++ F  +       + MT  IL     G      A +N    +
Sbjct: 167 VLGGMKGITYTQVAQYCVLIFAFMVPAIFISVMMTGHILPQLGFGAELVDAAGNNTGVYL 226

Query: 224 PANLASVGHAGWTSMPTFGSPMWWTIVSSIILGVGIGVLAQPQLIVRFMTVKSNRELNRA 283
              L  +      S  T GS      V  I   +  G    P +IVRF TV   ++   +
Sbjct: 227 LEKLDGLSAQLGFSQYTEGS-KGMIDVFFITGALMFGTAGLPHVIVRFFTVPKVKDARVS 285

Query: 284 VLIGAVFILIATGTAYVVGTLSNVYFMNT-EGVLSIGATVSEA--------------FPT 328
                VFI I   T   +   S V  + T  G  S G     A              +  
Sbjct: 286 AGWALVFIAIMYTTIPALAAFSRVNMIETINGPESTGVAYETAPDWIKNWEKTGLIKWDD 345

Query: 329 GNSDSIMPLYINKA---------------------MPEWFIYIFLVSLLAAAMSTISSQF 367
            N+D    +Y  K                      +P W I +     LAAA+ST +   
Sbjct: 346 KNNDG--KIYYAKGETNEMKIDRDIMVLATPEIANLPAWVIALVAAGGLAAALSTSAGLL 403

Query: 368 HAQGTSIGRDVYE-----TICGKKGLNSVIITRLGIIVAIVIAAILGYILPGGIVARGTA 422
               TS+  D+ +      I  K+ L   +  R+   + IV+A   G I P G VA   A
Sbjct: 404 LVISTSVSHDLLKKNFMPDISDKQEL---LYARIAAALGIVMAGYFG-INPPGFVAAVVA 459

Query: 423 LFFGLCSAAFLPAYALGLFWKRTTKEGAIAGLLTGTFVSLFCLVFI-------HQAESAA 475
           + FGL +++  PA  +G+F +   KEGAIAG++ G   S   +++        + A +  
Sbjct: 460 IAFGLAASSLFPAIIMGIFSRTMNKEGAIAGMVIGLLFSASYIIYFKFVNPGDNNASNWL 519

Query: 476 LGISKMLIGRDVLISAMPWPYVDPMVISLPLAFIATVIVS 515
            GIS   IG            +  M+I+  +AFI + + +
Sbjct: 520 FGISPEGIG------------MLGMIINFAVAFIVSKVTA 547