Pairwise Alignments

Query, 533 a.a., sodium:solute symporter family protein from Methanococcus maripaludis S2

Subject, 578 a.a., sodium/solute symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  117 bits (294), Expect = 9e-31
 Identities = 152/576 (26%), Positives = 227/576 (39%), Gaps = 113/576 (19%)

Query: 19  YLGYKGWKGTSSAEDYMVGGRKIHPFVMAMSYGA------TFISTAAIVGFGGFSGLFGM 72
           Y+G   W    S +++ V G  +HP V  M+  A      +FIS A IV F G+ G   +
Sbjct: 18  YIGIALWTRAGSTKEFYVAGGGVHPVVNGMATAADWMSAASFISLAGIVSFVGYDG--SV 75

Query: 73  SLLWLTFLNIFLGIFIAFVFFGKRTRKMGHNLNALTFPELLAKRFESKFIQWFSGLLIFC 132
            L+  T   + L + +A        RK G      T P+ L +R+ S+  +  +   + C
Sbjct: 76  YLMGWTGGYVLLALCMA-----PYLRKFGK----FTVPDFLGERYYSQAARTVA---VIC 123

Query: 133 AMPI---YAAAVLIGAARFIETTLNISFDVALLVFSIIIAVYVVMGGLKGVMYTDAFQGT 189
           A+ I   Y A  + G        L +  D  + +   ++  Y V+GG+KG+ YT   Q  
Sbjct: 124 AIFICFTYIAGQMRGVGVVFSRFLEVEVDTGVYIGMAVVFFYSVLGGMKGITYTQVAQYC 183

Query: 190 IMFFGM----LFL-LYMTYDILGGVTTAHQ---AISNMSG---LVPANLASV--GHAGWT 236
           ++ F      +FL + MT  I+  +    Q   A  N SG   L   N  SV  G A +T
Sbjct: 184 VLIFAFMVPAIFLSVMMTGHIIPQIGFGAQLLDAAGNNSGVYLLDKLNNLSVDLGFAPYT 243

Query: 237 SMPTFGSPMWWTIVSSIILGVGIGVLAQPQLIVRFMTVKSNRELNRAVLIGAVFILIATG 296
                GS     ++  I   + +G    P +IVRF TV   ++   +     VFI I   
Sbjct: 244 D----GSKSMIDVL-CITGALMVGTAGLPHVIVRFFTVPKVKDARVSAGWALVFIAIMYT 298

Query: 297 TAYVVGTLSNVYFMNTEGVLSIGATVSEAFP--------TG-------NSDSIMPLYINK 341
           T   +   S V  + T           E  P        TG       N D  +     K
Sbjct: 299 TVPALAAFSRVNMIETINGPDQKGVAYETAPNWIKNWEKTGLIKWDDKNGDGKIYYATGK 358

Query: 342 A-------------------------MPEWFIYIFLVSLLAAAMSTISSQFHAQGTSIGR 376
                                     +P W I +     LAAA+ST +       TS+  
Sbjct: 359 IEDAASTNEMKIDNDIIVLATPEIANLPAWVIALVAAGGLAAALSTSAGLLLVISTSVSH 418

Query: 377 DVYE-----TICGKKGLNSVIITRLGIIVAIVIAAILGYILPGGIVARGTALFFGLCSAA 431
           D+ +      I  KK L   +  RL   + IVIA   G + P G VA   A  FGL +++
Sbjct: 419 DLLKKNLMPNISDKKEL---MYARLAAGIGIVIAGYFG-VNPPGFVAAVVAFAFGLAASS 474

Query: 432 FLPAYALGLFWKRTTKEGAIAGLLTGTFVSLFCLVFIHQAESAA-------LGISKMLIG 484
             PA  +G+F K   KEGAIAG++ G F +   +V+    +  A       LGIS   IG
Sbjct: 475 LFPAIIMGIFSKTMNKEGAIAGMILGLFFTSGYIVYFKFIDPTANVPANWFLGISPEGIG 534

Query: 485 RDVLISAMPWPYVDPMVISLPLAFIATVIVSLLTKA 520
                           ++ + + F+   IVS +T A
Sbjct: 535 ----------------MVGMVINFVVAAIVSKVTAA 554