Pairwise Alignments

Query, 288 a.a., F420-non-reducing hydrogenase subunit from Methanococcus maripaludis S2

Subject, 228 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis JJ

 Score =  102 bits (253), Expect = 1e-26
 Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 26/165 (15%)

Query: 5   VKVGIIQLCGCSGCHISLLDLHEGLLDVLPALEIVYAPIIADVKEIP-DVDVFLVEGGV- 62
           VKV  +QL  C GC +SL D +E LLDVL A+++VY+  +ADV+EIP DVD+ L+EG V 
Sbjct: 2   VKVAHVQLSSCCGCLVSLADTYEQLLDVLGAIDLVYSQTLADVREIPDDVDIVLLEGSVC 61

Query: 63  -RSEHDEHLIHEIREKSKVVIAWGSCAAFGGIPGLGNMYTPEQLKETVYTTVSTDNPGVI 121
               H   +  E R+K K+++A G+CAA G I          Q+ + V+ + +       
Sbjct: 62  LSDHHAMEVALESRKKGKILVALGACAASGNITRFSK---GNQMSKPVHDSFA------- 111

Query: 122 PTEGVPELTTEVRAISDVVKADYVIPGCPPKPALTAGAIVALLEG 166
                         +++VVK D  IPGCPP P      ++A L G
Sbjct: 112 -------------PLTEVVKCDLAIPGCPPSPESIVAVVLAALNG 143