Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 476 a.a., NAD-reducing hydrogenase HoxS beta subunit from Synechococcus elongatus PCC 7942

 Score =  317 bits (811), Expect = 6e-91
 Identities = 162/414 (39%), Positives = 245/414 (59%), Gaps = 3/414 (0%)

Query: 4   VTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICGI 63
           + I+P++R+EGH K+S+ LDD G     + H+   RGFE+F  GRP  E+  I  RICGI
Sbjct: 5   IVIDPVTRIEGHAKISVFLDDQGNAEAARFHVVEYRGFEKFCEGRPFTEMAGITARICGI 64

Query: 64  CQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDSD 123
           C   H LA+ K  D     ++P AAE LR L++L  ++ SHAL F++L++PDF+LG DSD
Sbjct: 65  CPVSHLLAAAKTGDKILAVQIPPAAENLRRLINLAQIIQSHALSFFHLSSPDFLLGWDSD 124

Query: 124 PAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKRDE 183
           PA RN+ G+I A PE A+  I +R+ GQ ++E +GGR IH    VPGGV   LS+E    
Sbjct: 125 PARRNLFGLIAADPETARAGIRLRQFGQQLIEWLGGRKIHAAWAVPGGVRSLLSQEGMVW 184

Query: 184 LLNEIDEMIAYGQDGIALIKS-LNEKYMDLAKTLGVIDTWYLGMVKD-GKHNFYGDTLRF 241
           + + +   +A  +  +   K  L+ ++ +     G   + ++G+V D G    YG  LRF
Sbjct: 185 IRDRLPAELATVRATLDRFKRLLDREFREETAVFGDFPSLFMGLVADNGDWEHYGGHLRF 244

Query: 242 MSPDGKQTTD-FKPSEYLDNIGEHVVGHNYVKYPYNKKVGYPDGLYRVGPLAMLNVCDSM 300
           +   G+   D  +  +Y   +GE V   +Y+K+PY K  GYP+G+YRVGPLA LNVCD +
Sbjct: 245 VDSQGRIIADRLREDDYASFLGEAVEPWSYLKFPYYKPWGYPEGMYRVGPLARLNVCDRI 304

Query: 301 PTPLAEEARKDFADTFGKPANQSLAYNHARLIELLASCERVKELLEDSEITSTDIKAEVE 360
            T  AE  R++  D  G     S  Y++ARL+E+LAS E++ E++ED  + +  ++++  
Sbjct: 305 GTAGAEAERQELRDRAGGTVTSSFLYHYARLVEILASLEKIAEMVEDPNLQTGFLRSQAG 364

Query: 361 PKAGNGVGAIYAPRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAIQQAAE 414
                 +G   APRGTLFH+Y  D  G + + N+I+A+  N   M + + Q A+
Sbjct: 365 VNCLEAIGVSEAPRGTLFHHYRVDSHGKIERVNLIIATGQNNLAMNRTVTQIAQ 418