Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., hydrogenase large chain (RefSeq) from Shewanella amazonensis SB2B

 Score = 87.8 bits (216), Expect = 8e-22
 Identities = 85/336 (25%), Positives = 140/336 (41%), Gaps = 65/336 (19%)

Query: 3   KVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62
           +V I+P++R+EGH +V + +D+     +     T  RG E  + GR   +V  IV RICG
Sbjct: 4   RVVIDPITRIEGHLRVEVEVDENNVIQNAWSSSTLWRGIEVILKGRTPMDVGLIVQRICG 63

Query: 63  ICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFV----- 117
           +C   H+    +AV+ A G ++P  A+ LR LM     MH H +HFY+L   D+V     
Sbjct: 64  VCTYSHYRCGTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSA 123

Query: 118 LGPDSDPAARNII-----------GVIGAAPEVAK------------------------- 141
           L  D   AA+  +           G + A  E  K                         
Sbjct: 124 LSADPAKAAQVALKYTDKPIAAGEGELRAVQERVKGFVEKGQLGPFANAYWGNGTYKFTP 183

Query: 142 -----------KAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKRDELLNEIDE 190
                      KA+ ++RV   ++   GG+  HP + V GGV+ ++ +      L E  +
Sbjct: 184 EQNLIALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVT-SVRDMLSPARLQEWKQ 242

Query: 191 MIAYGQDGI-----ALIKSLNEKYMDLAKTLGVIDTW-YLG----MVKDGKHNFYGDTLR 240
             AY  D I     A I    E +      LG ++   +L     ++ DG++ F G  + 
Sbjct: 243 KHAYVTDFIKRAYQADIVMAAEAFGTEPSVLGGVNVKNFLATDDFVLADGEYMFNGGVI- 301

Query: 241 FMSPDGKQTTDFKPSEYLDNIGEHVVGHNYVKYPYN 276
            M+ D    +D  P    +++       +  ++PY+
Sbjct: 302 -MNGDLAGVSDINPDLIAEDVTHAWYSADNAQHPYD 336