Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 361 a.a., NADH dehydrogenase (ubiquinone) (NCBI) from Rhodospirillum rubrum S1H

 Score = 46.6 bits (109), Expect = 1e-09
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 25/203 (12%)

Query: 39  RGFEQFVVGRPAEEVPRIVPRICGICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLG 98
           RG E     R   +   +  R+C +C   H      A+++  G  VP  A+ LR +    
Sbjct: 42  RGIEYLATKRNIYQNIVLTERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADET 101

Query: 99  NMMHSHALHFYYLAAPDFVLGPDSDPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIG 158
             + SH  +   LA    ++G DS                +    +  R + Q   E + 
Sbjct: 102 KRVASHMFNVAILA---HIVGFDS----------------LFMHVMEAREIMQDTKEAVF 142

Query: 159 GRAIHPVTGVPGGVSKALSEEKRDELLNEIDEMIAYGQDGIALIKSLNEKYMDLAKTLGV 218
           G  +       GGV   L ++ RD  + ++D++    +D I  +   N   +D  + +GV
Sbjct: 143 GNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEIIPLYQTNPSIVDRTRGIGV 202

Query: 219 ------IDTWYLGMVKDGKHNFY 235
                 +D   +G V  G  + Y
Sbjct: 203 LSAADCVDYGLMGPVARGSGHAY 225