Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 486 a.a., coenzyme F420-reducing hydrogenase, alpha subunit from Dechlorosoma suillum PS

 Score =  336 bits (862), Expect = 8e-97
 Identities = 181/415 (43%), Positives = 256/415 (61%), Gaps = 5/415 (1%)

Query: 3   KVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62
           +V I+P+SR+EGHGKV++ LDD  +   V+LHI   RGFE+F+ GRP  EVP +V R+CG
Sbjct: 15  RVAIDPVSRVEGHGKVTLLLDDHNQVQQVRLHIVEFRGFEKFIQGRPYWEVPVMVQRLCG 74

Query: 63  ICQTPHHLASVKAVDAAWGA-EVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPD 121
           IC   HHLA+ KA+D   GA  +   AEK+R LMH G M+ SHALHF++L++PD + G D
Sbjct: 75  ICPVSHHLAASKALDLVVGAASITPTAEKMRRLMHYGQMLQSHALHFFHLSSPDLLFGFD 134

Query: 122 SDPAARNIIGVIGAAPEVAKKAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKALSEEKR 181
           SD   RNI+GV  A PEVAK+ I +R+ GQ ++    G+ IH    VPGGV+KAL    R
Sbjct: 135 SDVGQRNIVGVAAAHPEVAKQGILLRKFGQEVIRVTSGKRIHGTGAVPGGVNKALDPADR 194

Query: 182 DELLNEIDEMIAYGQDGIALIKSLNEKYMDLAKTLGVIDTWYLGMVK-DGKHNFYGDTLR 240
             LL ++++MIA+ +D + L K L+     L    G+  +    +V+ DG  +FY   LR
Sbjct: 195 AMLLQDVEQMIAWSRDAVHLTKRLHTSNPALYDQFGLFRSNLFSLVRADGALDFYHGHLR 254

Query: 241 FMSPDGKQTTD-FKPSEYLDNIGEHVVGHNYVKYPYNKKVGYPDGLYRVGPLAMLNVCDS 299
               DGK   D      Y   + E V   +Y+K+PY   +G   G Y+VGPLA +  CD 
Sbjct: 255 LRDGDGKVLLDGVDYQNYHHLLTEEVKSWSYMKFPYVTAMGREQGWYKVGPLARVQNCDF 314

Query: 300 MPTPLAEEARKDFAD-TFGKPANQSLAYNHARLIELLASCERVKELLEDSEITSTDIKAE 358
           +P+PLAE  R++F D   G   +  LAY+ AR+IE+L + E +KELL D ++   D+ + 
Sbjct: 315 IPSPLAEIERREFMDHGQGGLVHAPLAYHWARMIEMLHAAEVIKELLADDDLPGDDLMS- 373

Query: 359 VEPKAGNGVGAIYAPRGTLFHNYETDDKGIVVKANMIVASTHNVPTMEKAIQQAA 413
              +   GVG I APRGTL H+Y+ D+  +V  AN+IV++THN   M +A++Q A
Sbjct: 374 CGDRRREGVGVIEAPRGTLIHHYQVDEDDLVTMANLIVSTTHNNQAMNEAVRQVA 428