Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 510 a.a., periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  141 bits (355), Expect = 5e-38
 Identities = 120/424 (28%), Positives = 190/424 (44%), Gaps = 45/424 (10%)

Query: 4   VTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRICGI 63
           + I+P++R+EGH K  + +++ GK  D +L     RGFE  + GR   +  +IV RICG+
Sbjct: 19  IAIDPVTRIEGHLKAEVVVEN-GKVVDARLSGGMYRGFETILRGRDPRDASQIVQRICGV 77

Query: 64  CQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDFVLGPDSD 123
           C T H  ASV A+D A+GA+VP+     R L+   N + SH LHFY+L+A DFV GPD+ 
Sbjct: 78  CPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTA 137

Query: 124 P-AARNIIGVIGAAPEVAK-------KAIAMRRVGQSIVETIGGRAIHPVTGVPGGVSKA 175
           P   R     +  + E+ K       +A+ +RR+   +V   GGR  H    V GG ++ 
Sbjct: 138 PFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVGGATEI 197

Query: 176 LSEEKRDELLNEIDEMIAY-GQDGIALIKSLNEKYMDLAKT----LGVIDTWYLGMVKDG 230
            ++EK  E      ++  +  Q  + ++ ++  KY D+ K        +      +   G
Sbjct: 198 PTKEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPLDNSG 257

Query: 231 KHNFYGDTLRFMSPDGKQTTDFKPSEYLDNI-----GEHVVGHNYVK------------Y 273
           K + +   +     D      F PS+  + +      E   G NY +            Y
Sbjct: 258 KKHLFMPGVYAKGKD----MPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAGAY 313

Query: 274 PYNKKVGYPDGLYRVGPLAMLNVCDSMPTPLAEEARKD--------FADTFGKPANQSLA 325
            + K   Y      VGPLA + V +   +P+ ++  KD        F D  G+ A  SL 
Sbjct: 314 SFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRD-LGEEAAFSLM 372

Query: 326 YNH-ARLIELLASCERVKELLEDSEITSTDIKAEVEPKAGNGVGAIYAPRGTLFHNYETD 384
             H AR  E       ++  L++ +     +     P +  G G   APRG+L H  +  
Sbjct: 373 GRHVARAEETYYMLGAIEGWLKEIKAGEDTVVMPAVPASAEGTGFTEAPRGSLLHYVKVK 432

Query: 385 DKGI 388
           D  I
Sbjct: 433 DSKI 436