Pairwise Alignments

Query, 418 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 549 a.a., periplasmic [NiFe] hydrogenase, large subunit, isozyme 2 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 2   GKVTIEPLSRLEGHGKVSITLDDAGKPTDVKLHITALRGFEQFVVGRPAEEVPRIVPRIC 61
           G +TI+P++R+EGH K+ + + D GK  +        RG E  V GRP E+V   V R+C
Sbjct: 8   GPITIDPITRIEGHLKIDVDVKD-GKVANAWSSAQLFRGIEMIVQGRPPEDVHHYVQRVC 66

Query: 62  GICQTPHHLASVKAVDAAWGAEVPSAAEKLRELMHLGNMMHSHALHFYYLAAPDF 116
           G+C T H L S++AV+ A G + P AAE +R L+     +H H +HFY+L + DF
Sbjct: 67  GVCTTTHALTSIRAVENAIGLKPPPAAELVRLLILSTLDVHDHLVHFYHLHSLDF 121