Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 339 a.a., Electron transport complex protein RnfB from Pseudomonas fluorescens FW300-N2E2

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLE-VEYAS 252
           + E ECIGC KC++ACP   I    + +   L + C  C LCV  CPV+ I +  +  A+
Sbjct: 76  IREAECIGCTKCIQACPVDAIVGAAKLMHTVLIDECTGCDLCVAPCPVDCIEMRPLLTAN 135

Query: 253 AKPVTDEGLVWSEEK 267
             P+   GL +S E+
Sbjct: 136 VLPIVG-GLAFSTEE 149



 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 152 IAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPG 211
           IA I   +CI CT C Q CP +AI  A KL           TV  +EC GC+ CV  CP 
Sbjct: 73  IAFIREAECIGCTKCIQACPVDAIVGAAKL---------MHTVLIDECTGCDLCVAPCPV 123

Query: 212 SMIE 215
             IE
Sbjct: 124 DCIE 127



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 88  KGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI 147
           +  C+ C KC++ CP + I     A K    ++I +        C  C +CV  CPVD I
Sbjct: 78  EAECIGCTKCIQACPVDAIV---GAAKLMHTVLIDE--------CTGCDLCVAPCPVDCI 126

Query: 148 SIEDI 152
            +  +
Sbjct: 127 EMRPL 131



 Score = 39.7 bits (91), Expect = 1e-07
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 103 AEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI--SIEDIAVIDTDKC 160
           AE++ +P       + +   Q       +C+ C  C+  CPVDAI  + + +  +  D+C
Sbjct: 52  AELMKIPVLELDTSRGVAPAQIAFIREAECIGCTKCIQACPVDAIVGAAKLMHTVLIDEC 111

Query: 161 IYCTVCSQTCPWNAI 175
             C +C   CP + I
Sbjct: 112 TGCDLCVAPCPVDCI 126



 Score = 30.4 bits (67), Expect = 8e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 229 CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKV 285
           C  C  C+++CPV+ I        A  +    L+   ++C  C  C   CP   I++
Sbjct: 81  CIGCTKCIQACPVDAI------VGAAKLMHTVLI---DECTGCDLCVAPCPVDCIEM 128



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 9   DACLVCNACAKACPTEAIEIAPFKT 33
           D C  C+ C   CP + IE+ P  T
Sbjct: 109 DECTGCDLCVAPCPVDCIEMRPLLT 133



 Score = 28.1 bits (61), Expect = 4e-04
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 34  CIQCFSCATACPTGALVE----KDGKLVFNGSKCDLDGACQKACPV 75
           CI C  C  ACP  A+V         L+   + CDL   C   CPV
Sbjct: 81  CIGCTKCIQACPVDAIVGAAKLMHTVLIDECTGCDL---CVAPCPV 123



 Score = 27.7 bits (60), Expect = 5e-04
 Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 277 KCPTGAIKVVNPKG-------LELPSKKKTEKAN----EFAMCIRCGACAMKCPTGAL-K 324
           KCP G  + +           LEL + +    A       A CI C  C   CP  A+  
Sbjct: 39  KCPPGGRETIAALAELMKIPVLELDTSRGVAPAQIAFIREAECIGCTKCIQACPVDAIVG 98

Query: 325 MGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362
             K++H              C  C  CV  CP   +E+
Sbjct: 99  AAKLMH--------TVLIDECTGCDLCVAPCPVDCIEM 128



 Score = 23.9 bits (50), Expect = 0.007
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 374 CVMCLKCIEAC 384
           C+ C KCI+AC
Sbjct: 81  CIGCTKCIQAC 91