Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 191 a.a., electron transport complex, RnfABCDGE type, B subunit from Pseudomonas stutzeri RCH2

 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246
           + E ECIGC KC++ACP   I     ++   +   C  C LCVE CPV+ I +
Sbjct: 109 IREAECIGCTKCIQACPVDAIVGAARQMHTVIISECTGCDLCVEPCPVDCIDM 161



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 12/76 (15%)

Query: 143 PVDAISIED---IAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEEC 199
           P+DA   E    +A I   +CI CT C Q CP +AI  A +         +  TV   EC
Sbjct: 94  PLDAEGGEKPQMVAYIREAECIGCTKCIQACPVDAIVGAAR---------QMHTVIISEC 144

Query: 200 IGCEKCVEACPGSMIE 215
            GC+ CVE CP   I+
Sbjct: 145 TGCDLCVEPCPVDCID 160



 Score = 42.0 bits (97), Expect = 1e-08
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 88  KGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI 147
           +  C+ C KC++ CP + I   G A +    II          +C  C +CV  CPVD I
Sbjct: 111 EAECIGCTKCIQACPVDAIV--GAARQMHTVII---------SECTGCDLCVEPCPVDCI 159

Query: 148 SIEDI 152
            + ++
Sbjct: 160 DMIEV 164



 Score = 33.1 bits (74), Expect = 7e-06
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 6   IQEDACLVCNACAKACPTEAIEIAP-------FKTCIQCFSCATACPTGAL 49
           I+E  C+ C  C +ACP +AI  A           C  C  C   CP   +
Sbjct: 109 IREAECIGCTKCIQACPVDAIVGAARQMHTVIISECTGCDLCVEPCPVDCI 159



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 27/75 (36%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVL 93
           CI C  C  ACP  A+V                GA ++   V I +           C  
Sbjct: 114 CIGCTKCIQACPVDAIV----------------GAARQMHTVIISE-----------CTG 146

Query: 94  CEKCVEICPAEIISL 108
           C+ CVE CP + I +
Sbjct: 147 CDLCVEPCPVDCIDM 161



 Score = 30.4 bits (67), Expect = 4e-05
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 219 EKLGVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEE--KCAYCGPCAI 276
           E++   LP+    CG C              Y   KP   E +   ++  KC   G   I
Sbjct: 38  EQINALLPQT--QCGQC-------------GYPGCKPYA-EAIAGGDKINKCPPGGEATI 81

Query: 277 KCPTGAIKV-VNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKEY 335
           +     + V   P   E   K +       A CI C  C   CP  A+     V   ++ 
Sbjct: 82  QALADLLDVEAEPLDAEGGEKPQMVAYIREAECIGCTKCIQACPVDAI-----VGAARQM 136

Query: 336 ARVEFSPALCNECGECVDVCPQKTLEL 362
             V  S   C  C  CV+ CP   +++
Sbjct: 137 HTVIISE--CTGCDLCVEPCPVDCIDM 161



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 360 LELTGDDKMPLKGY-----CVMCLKCIEAC 384
           L+  G +K  +  Y     C+ C KCI+AC
Sbjct: 95  LDAEGGEKPQMVAYIREAECIGCTKCIQAC 124