Pairwise Alignments
Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 168 a.a., ferredoxin-type protein NapF from Vibrio cholerae E7946 ATCC 55056
Score = 62.8 bits (151), Expect = 7e-15
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 125 PIAVTKDCVACGVCVPECPVDAISIED----IAVIDTDKCIYCTVCSQTCPWNAIFVAGK 180
P A T +C CG CV C I D D+C +C C+Q+CP +
Sbjct: 33 PDAFTDECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSE 92
Query: 181 LPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLP----EACPACGLCV 236
P + + I + +++ + C C +ACP I + + P E C CG CV
Sbjct: 93 APWQAKVHITHHCLAQQQ-VECRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACV 151
Query: 237 ESCPVEVISL 246
CP +++
Sbjct: 152 SVCPSNAMTV 161
Score = 52.8 bits (125), Expect = 7e-12
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 34 CIQCFSCATACPTGALVEKDG---KLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKG- 89
C +C C TAC T + + DG + F+ +C C ++CP + P+
Sbjct: 40 CTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKV 99
Query: 90 ----HC-----VLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVP 140
HC V C C + CP E I +I P ++ C CG CV
Sbjct: 100 HITHHCLAQQQVECRSCQDACPEEAIHFA-------LQIGRTASPQVNSEQCSGCGACVS 152
Query: 141 ECPVDAISI 149
CP +A+++
Sbjct: 153 VCPSNAMTV 161
Score = 52.0 bits (123), Expect = 1e-11
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 157 TDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEY 216
TD+C C C C + I +K + + +EC C +C ++CP +
Sbjct: 37 TDECTRCGKCVTACETHII-------EKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVA 89
Query: 217 NGE---KLGVKLPEACPA-----CGLCVESCPVEVISLEVEYA-SAKPVTDEGLVWSEEK 267
E + V + C A C C ++CP E I ++ +A P + E+
Sbjct: 90 QSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRTASPQVNS------EQ 143
Query: 268 CAYCGPCAIKCPTGAIKV 285
C+ CG C CP+ A+ V
Sbjct: 144 CSGCGACVSVCPSNAMTV 161
Score = 50.4 bits (119), Expect = 3e-11
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 197 EECIGCEKCVEACPGSMIEYNG---EKLGVKLPEACPACGLCVESCP--VEVISLEVEYA 251
+EC C KCV AC +IE + + E C C C +SCP + V E +
Sbjct: 38 DECTRCGKCVTACETHIIEKGDGGFPTVNFSIDE-CTFCYQCAQSCPEPLFVAQSEAPWQ 96
Query: 252 SAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRC 311
+ +T L + +C C CP AI G + +E+ C C
Sbjct: 97 AKVHITHHCLAQQQVECRSCQDA---CPEEAIHFALQIGRTASPQVNSEQ------CSGC 147
Query: 312 GACAMKCPTGALKMGKMVH 330
GAC CP+ A+ + H
Sbjct: 148 GACVSVCPSNAMTVHYTQH 166
Score = 49.7 bits (117), Expect = 6e-11
Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 40/155 (25%)
Query: 62 KCDLDGACQKACPVGI-KKVDDRFP---YSKGHCVLCEKCVEICPAEIISLPGKAEKPKK 117
+C G C AC I +K D FP +S C C +C + CP + +A K
Sbjct: 39 ECTRCGKCVTACETHIIEKGDGGFPTVNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAK 98
Query: 118 EIIIPQEPIAVTKDCVACGVCVPECPVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAIFV 177
+ +T C+A + + C C CP AI
Sbjct: 99 --------VHITHHCLA-----------------------QQQVECRSCQDACPEEAIHF 127
Query: 178 AGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGS 212
A ++ + S VN E+C GC CV CP +
Sbjct: 128 ALQIGRTA-----SPQVNSEQCSGCGACVSVCPSN 157
Score = 47.4 bits (111), Expect = 3e-10
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 227 EACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVV 286
+ C CG CV +C +I + P + +S ++C +C CA CP
Sbjct: 38 DECTRCGKCVTACETHIIE---KGDGGFPTVN----FSIDECTFCYQCAQSCPEPLFVAQ 90
Query: 287 NPKGLELPSKKKTEKANEFA--MCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPAL 344
+ E P + K + + C +C CP A+ + A + +
Sbjct: 91 S----EAPWQAKVHITHHCLAQQQVECRSCQDACPEEAIHFALQIGRT---ASPQVNSEQ 143
Query: 345 CNECGECVDVCPQKTL 360
C+ CG CV VCP +
Sbjct: 144 CSGCGACVSVCPSNAM 159
Score = 38.1 bits (87), Expect = 2e-07
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 4 ISIQEDACLVCNACAKACPTE---AIEIAPFKT-------C-----IQCFSCATACPTGA 48
++ D C C CA++CP A AP++ C ++C SC ACP A
Sbjct: 65 VNFSIDECTFCYQCAQSCPEPLFVAQSEAPWQAKVHITHHCLAQQQVECRSCQDACPEEA 124
Query: 49 L-----VEKDGKLVFNGSKCDLDGACQKACP 74
+ + + N +C GAC CP
Sbjct: 125 IHFALQIGRTASPQVNSEQCSGCGACVSVCP 155
Score = 33.5 bits (75), Expect = 4e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 345 CNECGECVDVCPQKTLELTGDDKMPLKGY----CVMCLKCIEAC 384
C CG+CV C +E GD P + C C +C ++C
Sbjct: 40 CTRCGKCVTACETHIIE-KGDGGFPTVNFSIDECTFCYQCAQSC 82
Score = 32.3 bits (72), Expect = 1e-05
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 14 CNACAKACPTEAIEIA-----------PFKTCIQCFSCATACPTGAL 49
C +C ACP EAI A + C C +C + CP+ A+
Sbjct: 113 CRSCQDACPEEAIHFALQIGRTASPQVNSEQCSGCGACVSVCPSNAM 159
Score = 25.8 bits (55), Expect = 0.001
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 2 AGISIQEDACLVCNACAKACPTEAIEI 28
A + + C C AC CP+ A+ +
Sbjct: 135 ASPQVNSEQCSGCGACVSVCPSNAMTV 161