Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 189 a.a., electron transport complex protein RnfB (RefSeq) from Shewanella amazonensis SB2B

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 186 QKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVIS 245
           Q+  K   + E+ECIGC KC++ACP   I   G+ +   + + C  C LCVE CPV+ I 
Sbjct: 101 QQVKKVAYIREDECIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCID 160

Query: 246 LEVEYASAKPVTDEGLVWS 264
           +        PVT +   W+
Sbjct: 161 M-------LPVTQDIKTWN 172



 Score = 55.8 bits (133), Expect = 9e-13
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 149 IEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEA 208
           ++ +A I  D+CI CT C Q CP +AI  AGKL           TV  ++C GC+ CVE 
Sbjct: 103 VKKVAYIREDECIGCTKCIQACPVDAIVGAGKL---------MHTVITQDCTGCDLCVEP 153

Query: 209 CPGSMIE 215
           CP   I+
Sbjct: 154 CPVDCID 160



 Score = 45.8 bits (107), Expect = 1e-09
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 91  CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISI 149
           C+ C KC++ CP + I   GK                +T+DC  C +CV  CPVD I +
Sbjct: 114 CIGCTKCIQACPVDAIVGAGKLMHT-----------VITQDCTGCDLCVEPCPVDCIDM 161



 Score = 42.0 bits (97), Expect = 1e-08
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 89  GHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI- 147
           G     EK  E+   E   L    E+  K++   +E      +C+ C  C+  CPVDAI 
Sbjct: 76  GGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIRED-----ECIGCTKCIQACPVDAIV 130

Query: 148 -SIEDIAVIDTDKCIYCTVCSQTCPWNAI 175
            + + +  + T  C  C +C + CP + I
Sbjct: 131 GAGKLMHTVITQDCTGCDLCVEPCPVDCI 159



 Score = 35.4 bits (80), Expect = 1e-06
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 6   IQEDACLVCNACAKACPTEAI-------EIAPFKTCIQCFSCATACPTGAL 49
           I+ED C+ C  C +ACP +AI            + C  C  C   CP   +
Sbjct: 109 IREDECIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCI 159



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 20/98 (20%)

Query: 277 KCPTGAIKV---------VNPKGLELPSKKKTEKANEFAM--CIRCGACAMKCPTGAL-K 324
           KCP G             V P+ L   ++++ +K        CI C  C   CP  A+  
Sbjct: 72  KCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQACPVDAIVG 131

Query: 325 MGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362
            GK++H              C  C  CV+ CP   +++
Sbjct: 132 AGKLMH--------TVITQDCTGCDLCVEPCPVDCIDM 161



 Score = 31.2 bits (69), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 34  CIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGA--CQKACPV 75
           CI C  C  ACP  A+V   GKL+      D  G   C + CPV
Sbjct: 114 CIGCTKCIQACPVDAIVGA-GKLMHTVITQDCTGCDLCVEPCPV 156



 Score = 26.9 bits (58), Expect = 5e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 215 EYNGEKLGVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPC 274
           E   +K+     + C  C  C+++CPV+ I        A  +    +    + C  C  C
Sbjct: 100 EQQVKKVAYIREDECIGCTKCIQACPVDAI------VGAGKLMHTVIT---QDCTGCDLC 150

Query: 275 AIKCPTGAIKVV 286
              CP   I ++
Sbjct: 151 VEPCPVDCIDML 162



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 22/58 (37%)

Query: 349 GECVDVCP-------QKTLELTGDDKMPLKGY---------------CVMCLKCIEAC 384
           G+ ++ CP       +K  EL G +  PL                  C+ C KCI+AC
Sbjct: 67  GDQINKCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQAC 124



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 11  CLVCNACAKACPTEAIEIAP 30
           C  C+ C + CP + I++ P
Sbjct: 144 CTGCDLCVEPCPVDCIDMLP 163