Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 49.7 bits (117), Expect = 6e-11
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 193 TVNEEECIGCEKCVEACPGSMIEYNGEKLGVKL---PEACPACGLCVESCPVEVISLEVE 249
           T +E  C+GC+ C   CPG  I +     G++       C  CGLC   C  + I L  +
Sbjct: 36  TFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLSND 95

Query: 250 Y------ASAKPVTDEGLVWSEEKCAYCG----PCAIKCPTGAIKVVNPKGLEL 293
           +      A    +TD+ LV +   C+ CG    P A      A K V+P+   L
Sbjct: 96  WHLSHLQADKYRLTDQALV-AYAACSGCGTKMLPTADALMRLAYKKVSPRSEHL 148



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 17/107 (15%)

Query: 252 SAKPVTDEGLV-WSEEKCAYCGPCAIKCPTGAIKVVN-PKGLELPSKKKTEKANEFAMCI 309
           S  P    G V + E  C  C  C   CP GAI+    P+GL       T        C+
Sbjct: 25  SPTPAAYRGKVTFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNT--------CV 76

Query: 310 RCGACAMKCPTGALKMGKMVH----EGKEYARVE---FSPALCNECG 349
            CG C+  C T A+K+    H    +  +Y   +    + A C+ CG
Sbjct: 77  NCGLCSHYCLTKAIKLSNDWHLSHLQADKYRLTDQALVAYAACSGCG 123



 Score = 32.7 bits (73), Expect = 7e-06
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 132 CVACGVCVPECPVDAISIEDIA-----VIDTDKCIYCTVCSQTCPWNAIFVA-----GKL 181
           CV C +C   CP  AI  E+       +I  + C+ C +CS  C   AI ++       L
Sbjct: 42  CVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLSNDWHLSHL 101

Query: 182 PQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVK---LPEACPAC 232
              + +      V    C GC   +     +++    +K+  +   L   CP C
Sbjct: 102 QADKYRLTDQALVAYAACSGCGTKMLPTADALMRLAYKKVSPRSEHLRHLCPDC 155



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 4  ISIQEDACLVCNACAKACPTEAIEIAP----------FKTCIQCFSCATACPTGAL 49
          ++  E AC+ C  C   CP  AI                TC+ C  C+  C T A+
Sbjct: 35 VTFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAI 90



 Score = 29.6 bits (65), Expect = 6e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 156 DTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIE 215
           D   C+ C +C   CP  AI       ++R + ++ F +    C+ C  C   C    I+
Sbjct: 38  DETACVGCKMCEHVCPGGAIRF-----EERPEGLR-FMIWHNTCVNCGLCSHYCLTKAIK 91

Query: 216 YNGE 219
            + +
Sbjct: 92  LSND 95



 Score = 29.3 bits (64), Expect = 8e-05
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 54  GKLVFNGSKCDLDGACQKACPVGIKKVDD-----RFPYSKGHCVLCEKCVEICPAEIISL 108
           GK+ F+ + C     C+  CP G  + ++     RF      CV C  C   C  + I L
Sbjct: 33  GKVTFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKL 92



 Score = 29.3 bits (64), Expect = 8e-05
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 91  CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIE 150
           CV C+ C  +CP   I    + E  +  I            CV CG+C   C   AI + 
Sbjct: 42  CVGCKMCEHVCPGGAIRFEERPEGLRFMI--------WHNTCVNCGLCSHYCLTKAIKLS 93

Query: 151 D 151
           +
Sbjct: 94  N 94