Pairwise Alignments

Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 189 a.a., electron transport complex, RnfABCDGE type, B subunit (RefSeq) from Shewanella loihica PV-4

 Score = 59.7 bits (143), Expect = 7e-14
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246
           + E ECIGC KC++ACP   I   G+++   + + C  C LCVE CPV+ I +
Sbjct: 109 IREAECIGCTKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVEPCPVDCIDM 161



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 149 IEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEA 208
           ++ +A I   +CI CT C Q CP +AI   GK         +  TV  + C GC+ CVE 
Sbjct: 103 VKKVAFIREAECIGCTKCIQACPVDAILGTGK---------QMHTVITDYCTGCDLCVEP 153

Query: 209 CPGSMIE 215
           CP   I+
Sbjct: 154 CPVDCID 160



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 88  KGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI 147
           +  C+ C KC++ CP + I   GK           Q    +T  C  C +CV  CPVD I
Sbjct: 111 EAECIGCTKCIQACPVDAILGTGK-----------QMHTVITDYCTGCDLCVEPCPVDCI 159

Query: 148 SIEDIA 153
            +  +A
Sbjct: 160 DMIPVA 165



 Score = 33.5 bits (75), Expect = 5e-06
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 20/98 (20%)

Query: 277 KCPTGAIKV---------VNPKGLELPSKKKTEKANEF--AMCIRCGACAMKCPTGA-LK 324
           KCP G             V+P+ L   ++ + +K      A CI C  C   CP  A L 
Sbjct: 72  KCPPGGTATMEKLAELMGVDPEPLTANAETQVKKVAFIREAECIGCTKCIQACPVDAILG 131

Query: 325 MGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362
            GK +H              C  C  CV+ CP   +++
Sbjct: 132 TGKQMH--------TVITDYCTGCDLCVEPCPVDCIDM 161



 Score = 30.8 bits (68), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 343 ALCNECGECVDVCPQKTLELTGDD-KMPLKGYCVMCLKCIEAC 384
           A C  C +C+  CP   +  TG      +  YC  C  C+E C
Sbjct: 112 AECIGCTKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVEPC 154



 Score = 28.9 bits (63), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 24/67 (35%)

Query: 340 FSPALCNECGECVDVCP-------QKTLELTGDDKMPL---------------KGYCVMC 377
           ++ A+ N  GE ++ CP       +K  EL G D  PL               +  C+ C
Sbjct: 60  YAEAIAN--GEKINKCPPGGTATMEKLAELMGVDPEPLTANAETQVKKVAFIREAECIGC 117

Query: 378 LKCIEAC 384
            KCI+AC
Sbjct: 118 TKCIQAC 124



 Score = 28.9 bits (63), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 9   DACLVCNACAKACPTEAIEIAPFKTCIQCFS 39
           D C  C+ C + CP + I++ P    +Q +S
Sbjct: 142 DYCTGCDLCVEPCPVDCIDMIPVAETLQNWS 172



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 69  CQKACPVGIKKVDDRFPYS--KGHCVLCEKCVEICPAEIISLPGKAE 113
           C +ACPV       +  ++    +C  C+ CVE CP + I +   AE
Sbjct: 120 CIQACPVDAILGTGKQMHTVITDYCTGCDLCVEPCPVDCIDMIPVAE 166