Pairwise Alignments
Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 180 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F
Score = 57.4 bits (137), Expect = 3e-13
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 266 EKCAYCGPCAIKCPTGAIKVVN--PKGLELPSKKKTEKANEFAMCIRCGA--CAMKCPTG 321
E+C C C++ C K ++ G+ + S E +C+ C CA+ CPTG
Sbjct: 10 ERCIGCHGCSLACARLVHKRLSWATAGIRITSAGGLSTGFEARLCLACNPAPCALACPTG 69
Query: 322 ALKMGKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLELTGDDKMPLKGYCVMCLKCI 381
A + ++ V+ + LC CG C CP + L G+ +P C+ C +C+
Sbjct: 70 A-------YVQRKGGGVKVNRDLCIRCGNCAAACPVDAIHLDGETGLPY--VCIHCGRCV 120
Query: 382 EAC 384
C
Sbjct: 121 PFC 123
Score = 56.2 bits (134), Expect = 7e-13
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 227 EACPACGLCVESCPVEVISLEVEYASAK-PVTDEGLV---WSEEKCAYCGP--CAIKCPT 280
E C C C +C ++ + +A+A +T G + + C C P CA+ CPT
Sbjct: 10 ERCIGCHGCSLAC-ARLVHKRLSWATAGIRITSAGGLSTGFEARLCLACNPAPCALACPT 68
Query: 281 GAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKEYARVEF 340
GA V KG + + +CIRCG CA CP A+ + +G+
Sbjct: 69 GAY--VQRKGGGVKVNRD--------LCIRCGNCAAACPVDAIHL-----DGETGL---- 109
Query: 341 SPALCNECGECVDVCPQKTLEL 362
P +C CG CV CP +EL
Sbjct: 110 -PYVCIHCGRCVPFCPHACIEL 130
Score = 51.6 bits (122), Expect = 2e-11
Identities = 41/165 (24%), Positives = 58/165 (35%), Gaps = 62/165 (37%)
Query: 9 DACLVCNACAKACP----------TEAIEIAPF---------KTCIQC--FSCATACPTG 47
+ C+ C+ C+ AC T I I + C+ C CA ACPTG
Sbjct: 10 ERCIGCHGCSLACARLVHKRLSWATAGIRITSAGGLSTGFEARLCLACNPAPCALACPTG 69
Query: 48 ALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIIS 107
A V++ G G+K ++ C+ C C CP + I
Sbjct: 70 AYVQRKGG--------------------GVK-------VNRDLCIRCGNCAAACPVDAIH 102
Query: 108 LPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIEDI 152
L G+ P C+ CG CVP CP I + D+
Sbjct: 103 LDGETGLPYV--------------CIHCGRCVPFCPHACIELADL 133
Score = 48.5 bits (114), Expect = 1e-10
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 160 CIYCTV--CSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYN 217
C+ C C+ CP G Q++ +K VN + CI C C ACP I +
Sbjct: 54 CLACNPAPCALACP------TGAYVQRKGGGVK---VNRDLCIRCGNCAAACPVDAIHLD 104
Query: 218 GEKLGVKLPEACPACGLCVESCPVEVISL 246
GE LP C CG CV CP I L
Sbjct: 105 GE---TGLPYVCIHCGRCVPFCPHACIEL 130
Score = 45.8 bits (107), Expect = 9e-10
Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 36/146 (24%)
Query: 197 EECIGCEKCVEACPGSMIE-YNGEKLGVKLPEA-----------CPACGL--CVESCPVE 242
E CIGC C AC + + + G+++ A C AC C +CP
Sbjct: 10 ERCIGCHGCSLACARLVHKRLSWATAGIRITSAGGLSTGFEARLCLACNPAPCALACPTG 69
Query: 243 VISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKA 302
Y K G+ + + C CG CA CP AI + GL
Sbjct: 70 A------YVQRK---GGGVKVNRDLCIRCGNCAAACPVDAIHLDGETGLPY--------- 111
Query: 303 NEFAMCIRCGACAMKCPTGALKMGKM 328
+CI CG C CP +++ +
Sbjct: 112 ----VCIHCGRCVPFCPHACIELADL 133
Score = 42.4 bits (98), Expect = 1e-08
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 3 GISIQEDACLVCNACAKACPTEAIEI-----APFKTCIQCFSCATACPTGALVEKD---- 53
G+ + D C+ C CA ACP +AI + P+ CI C C CP + D
Sbjct: 78 GVKVNRDLCIRCGNCAAACPVDAIHLDGETGLPY-VCIHCGRCVPFCPHACIELADLPDT 136
Query: 54 GKLVFNGSKCDLDGACQKACPVG 76
D GA ++A P G
Sbjct: 137 TDTTDTPDTMDAPGAPEQATPDG 159
Score = 39.7 bits (91), Expect = 7e-08
Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 31/156 (19%)
Query: 26 IEIAPFKTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFP 85
++ + + CI C C+ AC LV K G + G +
Sbjct: 4 LKASRMERCIGCHGCSLAC--ARLVHKRLSWATAGIRITSAGGLSTGFEARL-------- 53
Query: 86 YSKGHCVLCEK--CVEICPA-EIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPEC 142
C+ C C CP + G K +++ C+ CG C C
Sbjct: 54 -----CLACNPAPCALACPTGAYVQRKGGGVKVNRDL------------CIRCGNCAAAC 96
Query: 143 PVDAISIEDIAVIDTDKCIYCTVCSQTCPWNAIFVA 178
PVDAI ++ + CI+C C CP I +A
Sbjct: 97 PVDAIHLDGETGLPY-VCIHCGRCVPFCPHACIELA 131
Score = 39.3 bits (90), Expect = 9e-08
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 132 CVACGV--CVPECPVDA-ISIEDIAV-IDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQK 187
C+AC C CP A + + V ++ D CI C C+ CP +AI + G+
Sbjct: 54 CLACNPAPCALACPTGAYVQRKGGGVKVNRDLCIRCGNCAAACPVDAIHLDGE------- 106
Query: 188 TIKSFTVNEEECIGCEKCVEACPGSMIE 215
T CI C +CV CP + IE
Sbjct: 107 -----TGLPYVCIHCGRCVPFCPHACIE 129