Pairwise Alignments
Query, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 135 bits (340), Expect = 2e-36
Identities = 92/320 (28%), Positives = 137/320 (42%), Gaps = 60/320 (18%)
Query: 11 CLVCNACAKACPTEAIEIAPF----------------KTCIQCFSCATACPTGALVEKDG 54
C+ C C++ CPT AIE+ P + C+ C CA ACP
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACP--------- 82
Query: 55 KLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPAEIISLPGKAEK 114
F+ K ++ P K+ ++ CVLCE+C +CP I + + E
Sbjct: 83 ---FDAVKLSINDKPITEMPQ-YPKIKRGIELNQSKCVLCEQCELVCPQCAIDV--EREV 136
Query: 115 PKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI----------SIEDIA--VIDTDKCIY 162
P+++ ++ E DCV CG+C CP DAI S+ IA ID D C+Y
Sbjct: 137 PERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVY 196
Query: 163 CTVCSQTCPWNAIF-------VAGKL--PQKRQKTIKSFTVNEEECIGCEKCVEACPGSM 213
C VC + CP NAI +A K+ P+ + ++++ C+ C C CP
Sbjct: 197 CKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADA 256
Query: 214 IE----YNGEKLGVKLPEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCA 269
IE + GE + + P AC ACG C+ CP + V + +V +++ C
Sbjct: 257 IEVEKPFEGELI-IDEP-ACNACGACISVCPCNALVFPQPEKQGDKVPN--VVVNQDVCI 312
Query: 270 YCGPCAIKCPTGAIKVVNPK 289
CG C CP A+ V K
Sbjct: 313 LCGACTHSCPVDALTVKRTK 332
Score = 124 bits (311), Expect = 4e-33
Identities = 87/306 (28%), Positives = 132/306 (43%), Gaps = 47/306 (15%)
Query: 91 CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI--S 148
CV C C EICP I + K +I P+ + +++ CV CG+C CP DA+ S
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPK--LDISEKCVLCGMCACACPFDAVKLS 89
Query: 149 IEDIAV--------------IDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTV 194
I D + ++ KC+ C C CP AI V ++P+++ + T+
Sbjct: 90 INDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITI 149
Query: 195 NEEECIGCEKCVEACPGSMIEYNGEKLG---------VKLP-EACPACGLCVESCP---V 241
+++C+ C C E CP IE + +K+ +AC C +C ++CP +
Sbjct: 150 KKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAI 209
Query: 242 EVISLEVEYAS--AKP-----VTDEGLVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELP 294
E I + AS KP + + + ++ C CG CA CP AI+V P EL
Sbjct: 210 EAICYKCPLASKIKKPELYGEIKGQTNI-DKDLCVSCGWCANICPADAIEVEKPFEGELI 268
Query: 295 SKKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPALCNECGECVDV 354
+ C CGAC CP AL + +G + V + +C CG C
Sbjct: 269 IDEPA--------CNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHS 320
Query: 355 CPQKTL 360
CP L
Sbjct: 321 CPVDAL 326
Score = 91.7 bits (226), Expect = 3e-23
Identities = 78/303 (25%), Positives = 116/303 (38%), Gaps = 83/303 (27%)
Query: 156 DTDKCIYCTVCSQTCPWNAI-----------------------------------FVAGK 180
D C+ C +CS+ CP +AI F A K
Sbjct: 28 DDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVK 87
Query: 181 LP---------QKRQKTIKSFTVNEEECIGCEKCVEACPGSMIEYNGE----------KL 221
L + K + +N+ +C+ CE+C CP I+ E ++
Sbjct: 88 LSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEI 147
Query: 222 GVKLPEACPACGLCVESCPVEVISL---EVEYASAKPVTDEGLVWSEEKCAYCGPCAIKC 278
+K + C CG+C E CP + I L ++ S P+ D + + C YC C C
Sbjct: 148 TIK-KDDCVLCGICAEYCPADAIELIPNDMNALSLNPIAD--IKIDLDACVYCKVCEKAC 204
Query: 279 PTGAIKVVNPKGLELPSKKKTEKANEFA--------MCIRCGACAMKCPTGALKMGKMVH 330
P AI+ + K KK E E +C+ CG CA CP A+++ K
Sbjct: 205 PHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEK-PF 263
Query: 331 EGKEYARVEFSPALCNECGECVDVCPQKTL-----ELTGDDKMP----LKGYCVMCLKCI 381
EG+ + CN CG C+ VCP L E G DK+P + C++C C
Sbjct: 264 EGE----LIIDEPACNACGACISVCPCNALVFPQPEKQG-DKVPNVVVNQDVCILCGACT 318
Query: 382 EAC 384
+C
Sbjct: 319 HSC 321
Score = 89.0 bits (219), Expect = 2e-22
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 44/203 (21%)
Query: 1 LAGISIQEDACLVCNACAKACPTEAIEIAP-----------------FKTCIQCFSCATA 43
L I+I++D C++C CA+ CP +AIE+ P C+ C C A
Sbjct: 144 LGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKA 203
Query: 44 CPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGHCVLCEKCVEICPA 103
CP A+ + + KC L +K P ++ + K CV C C ICPA
Sbjct: 204 CPHNAI----EAICY---KCPLASKIKK--PELYGEIKGQTNIDKDLCVSCGWCANICPA 254
Query: 104 EIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISIED---------IAV 154
+ I + EKP + +I EP C ACG C+ CP +A+ V
Sbjct: 255 DAI----EVEKPFEGELIIDEPA-----CNACGACISVCPCNALVFPQPEKQGDKVPNVV 305
Query: 155 IDTDKCIYCTVCSQTCPWNAIFV 177
++ D CI C C+ +CP +A+ V
Sbjct: 306 VNQDVCILCGACTHSCPVDALTV 328
Score = 85.1 bits (209), Expect = 3e-21
Identities = 57/184 (30%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 229 CPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIKV-VN 287
C CG+C E CP I + A K D + EKC CG CA CP A+K+ +N
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVKLSIN 91
Query: 288 PKGL-ELPSKKKTEKANEF--AMCIRCGACAMKCPTGALKMGKMVHEGKEYARVEFSPAL 344
K + E+P K ++ E + C+ C C + CP A+ + + V E K E +
Sbjct: 92 DKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKK 151
Query: 345 --CNECGECVDVCPQKTLELTGDDKMPLK-----------GYCVMCLKCIEACNKTKKEA 391
C CG C + CP +EL +D L CV C C +AC EA
Sbjct: 152 DDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEA 211
Query: 392 LSLK 395
+ K
Sbjct: 212 ICYK 215
Score = 64.3 bits (155), Expect = 5e-15
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 261 LVWSEEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPT 320
L W + C CG C+ CPT AI+ + P G K + C+ CG CA CP
Sbjct: 25 LKWDDCTCVGCGICSEICPTSAIE-MGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPF 83
Query: 321 GALKMG---KMVHEGKEYAR----VEFSPALCNECGECVDVCPQKTLELTGD--DKMPL- 370
A+K+ K + E +Y + +E + + C C +C VCPQ +++ + ++ L
Sbjct: 84 DAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLV 143
Query: 371 -------KGYCVMCLKCIEAC 384
K CV+C C E C
Sbjct: 144 LGEITIKKDDCVLCGICAEYC 164
Score = 33.1 bits (74), Expect = 1e-05
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 332 GKEYARVEFSPALCNECGECVDVCPQKTLEL-------TGD---DKMPLKGYCVMCLKCI 381
G E +++ C CG C ++CP +E+ GD K+ + CV+C C
Sbjct: 19 GVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCA 78
Query: 382 EAC 384
AC
Sbjct: 79 CAC 81